Search result

BaseInfo

ncRNA ID novel_gma_miR8604
Species Glycine max
Class miRNA
Genome position Chr15:982926-983122 [-]
Reference genome Glycine_max_v2.0
Source SRR1451621
Length 25
Mature sequence(if miRNA) 1 - UGAUGAUAAGGACUAAAAGAGAAUU - 25
Stem-loop(if miRNA) --UUAA             C  -   U     ---U    A   -AUAA               UUA    UA     --  --     UUUU     UA   AU
      CUUUUAGUCCUUA UA CAA AUAUA    AUAU UAU     AUAAUUAGCUACAAA   AUUA  AAUUA  UC  AACUA    UUUAU  CAA  U
      ||||||||||||| || ||| |||||    |||| |||     |||||||||||||||   ||||  |||||  ||  |||||    |||||  |||
      GAAAAUCAGGAAU GU GUU UAUAU    UAUA AUA     UAUUAAUUGAUGUUU   UAAU  UUGAU  AG  UUGAU    AAAUA  GUU  A
UUAAGA             A  A   U     UCAU    -   GUUAA               UUA    CA     UA  CA     ---U     GC   CU
Stem-loop sequence UUAACUUUUAGUCCUUACUACAAUAUAUAUAUAUAUAUAUAAAUAAUUAGCUACAAAUUAAUUAUAAAUUAUCAACUAUUUUUUUAUUACAAAUUAUCUUGCGAUAAAUUAGUUACGAAUUAGUUACUAAUAUUUUUGUAGUUAAUUAUAAUUGAUAAUAUUACUUAUAUUUUGAUGAUAAGGACUAAAAGAGAAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003518407.3
ncRNA:25   UUAAGAGAAAAUCAGGAAUAGUAGU   1
  *=*|*||||||=||||||||||*||
targets:240   CGGUGUCUUUUGGUCCUUAUCACCA   264

2.5 PREDICTED: Glycine max UPF0481 protein At3g47200-like (LOC100803577), mRNA UPF0481 protein At3g47200-like(LOC100803577) coding protein psRNATarget