ncRNA ID | novel_gma_miR8604 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr15:982926-983122 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451621 |
Length | 25 |
Mature sequence(if miRNA) | 1 - UGAUGAUAAGGACUAAAAGAGAAUU - 25 |
Stem-loop(if miRNA) |
--UUAA             C  -   U     ---U    A   -AUAA               UUA    UA     --  --     UUUU     UA   AU       CUUUUAGUCCUUA UA CAA AUAUA    AUAU UAU     AUAAUUAGCUACAAA   AUUA  AAUUA  UC  AACUA    UUUAU  CAA  U       ||||||||||||| || ||| |||||    |||| |||     |||||||||||||||   ||||  |||||  ||  |||||    |||||  |||       GAAAAUCAGGAAU GU GUU UAUAU    UAUA AUA     UAUUAAUUGAUGUUU   UAAU  UUGAU  AG  UUGAU    AAAUA  GUU  A UUAAGA             A  A   U     UCAU    -   GUUAA               UUA    CA     UA  CA     ---U     GC   CU |
Stem-loop sequence | UUAACUUUUAGUCCUUACUACAAUAUAUAUAUAUAUAUAUAAAUAAUUAGCUACAAAUUAAUUAUAAAUUAUCAACUAUUUUUUUAUUACAAAUUAUCUUGCGAUAAAUUAGUUACGAAUUAGUUACUAAUAUUUUUGUAGUUAAUUAUAAUUGAUAAUAUUACUUAUAUUUUGAUGAUAAGGACUAAAAGAGAAUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003518407.3 |
|
2.5 | PREDICTED: Glycine max UPF0481 protein At3g47200-like (LOC100803577), mRNA | UPF0481 protein At3g47200-like(LOC100803577) | coding protein | psRNATarget |