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BaseInfo

ncRNA ID novel_gma_miR8600
Species Glycine max
Class miRNA
Genome position Chr18:57500681-57500860 [-]
Reference genome Glycine_max_v2.0
Source SRR1294476
Length 24
Mature sequence(if miRNA) 1 - CAAGAAUCUGUAUACUAAUUGCCU - 24
Stem-loop(if miRNA) --                    C    ---   CAUCAAAUUACAAGAAAAAUAUCAACAAAUUGAUGUACAUAUAUAUAUAUAAAGAAAG
  GCAAUUAGUAUACAGAUUCU GUAC   GUA                                                          C
  |||||||||||||||||||| ||||   |||                                                          A
  CGUUAAUCAUAUGUCUAAGA CAUG   AUA                                                          C
UC                    A    AGA   UAUAUAUACAUGUAGUUUAAUGUUCUUUUUAUAGUUGUUUAAGGCUAUGUUAUAAGUU
Stem-loop sequence GCAAUUAGUAUACAGAUUCUCGUACGUACAUCAAAUUACAAGAAAAAUAUCAACAAAUUGAUGUACAUAUAUAUAUAUAAAGAAAGCACUUGAAUAUUGUAUCGGAAUUUGUUGAUAUUUUUCUUGUAAUUUGAUGUACAUAUAUAUAUAAGAGUACAAGAAUCUGUAUACUAAUUGCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014768345.1
ncRNA:24   UCCGUUAAUCAUAUGUCUAAGAAC   1
  ****||||=|||||=|||||||||
targets:782   UACGAAUUGGUAUAUAGAUUCUUG   805

2.5 PREDICTED: Glycine max uncharacterized LOC102661928 (LOC102661928), transcript variant X2, mRNA uncharacterized LOC102661928(LOC102661928) coding protein psRNATarget
XM_014768346.1
ncRNA:24   UCCGUUAAUCAUAUGUCUAAGAAC   1
  ****||||=|||||=|||||||||
targets:693   UACGAAUUGGUAUAUAGAUUCUUG   716

2.5 PREDICTED: Glycine max uncharacterized LOC102661928 (LOC102661928), transcript variant X3, mRNA uncharacterized LOC102661928(LOC102661928) coding protein psRNATarget