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BaseInfo

ncRNA ID novel_gma_miR8578
Species Glycine max
Class miRNA
Genome position Chr15:48846557-48846636 [-]
Reference genome Glycine_max_v2.0
Source SRR1451621
Length 24
Mature sequence(if miRNA) 57 - AAUGUCAACUAGAUUUUCUUAGCC - 80
Stem-loop(if miRNA) --             UUU      C   CA   AU     
  AAUGUCAACUAGA   UCUUAG CGA  UCG  UAGGAU
  |||||||||||||   |||||| |||  |||  |||||U
  UUACAGUUGGUUU   GGGAUC GCU  AGU  AUUUUU
GA             UUU      A   AC   -C     
Stem-loop sequence AAUGUCAACUAGAUUUUCUUAGCCGACAUCGAUUAGGAUUUUUUUACUGACAUCGACUAGGGUUUUUUGGUUGACAUUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006584076.2
ncRNA:24   CCGAUUCUUUUAGAUCAACUGUAA   1
  ||=--=|||||||*||||||||||
targets:1345   GGU--GGAAAAUCGAGUUGACAUU   1366

2.5 PREDICTED: Glycine max type I inositol polyphosphate 5-phosphatase 12-like (LOC100817047), transcript variant X2, mRNA type I inositol polyphosphate 5-phosphatase 12-like(LOC100817047) coding protein psRNATarget
XM_006584075.2
ncRNA:24   CCGAUUCUUUUAGAUCAACUGUAA   1
  ||=--=|||||||*||||||||||
targets:1345   GGU--GGAAAAUCGAGUUGACAUU   1366

2.5 PREDICTED: Glycine max type I inositol polyphosphate 5-phosphatase 12-like (LOC100817047), transcript variant X1, mRNA type I inositol polyphosphate 5-phosphatase 12-like(LOC100817047) coding protein psRNATarget