Search result

BaseInfo

ncRNA ID novel_gma_miR8572
Species Glycine max
Class miRNA
Genome position Chr10:32915382-32915477 [-]
Reference genome Glycine_max_v2.0
Source SRR1451621
Length 24
Mature sequence(if miRNA) 73 - UAACCGUCUUUGAAUGUAAACUCU - 96
Stem-loop(if miRNA) --                  -  C   AACACAACA          A     A
  UAACCGUCUUUGAAUGUA AA UCU         UUUAAAGAUG UUAUU G
  |||||||||||||||||| || |||         |||||||||| |||||
  GUUGGCAGAAACUUACAU UU AGA         AAGUUUCUAC AAUAA U
UU                  C  U   ---------          C     U
Stem-loop sequence UAACCGUCUUUGAAUGUAAACUCUAACACAACAUUUAAAGAUGAUUAUUAGUUAAUAACCAUCUUUGAAAGAUUUCUACAUUCAAAGACGGUUGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014775607.1
ncRNA:24   UCUCAAAUGUAAGUUUCUGCCAAU   1
  |||**|*|||||||||||||||||
targets:1481   AGACAUAACAUUCAAAGACGGUUA   1504

1.0 PREDICTED: Glycine max protein MOR1 (LOC102659664), transcript variant X1, mRNA protein MOR1(LOC102659664) coding protein psRNATarget
XM_014775607.1
ncRNA:24   UCUCAAAUGUAAGUUUCUGCCAAU   1
  |||****|||||||||||||||||
targets:1536   AGAAGCAACAUUCAAAGACGGUUA   1559

2.0 PREDICTED: Glycine max protein MOR1 (LOC102659664), transcript variant X1, mRNA protein MOR1(LOC102659664) coding protein psRNATarget
XM_014775607.1
ncRNA:24   UCUCAAAUGUAAGUUUCUGCCAAU   1
  |||**|*||||||||||=||||||
targets:1591   AGACAUAACAUUCAAAGGCGGUUA   1614

2.5 PREDICTED: Glycine max protein MOR1 (LOC102659664), transcript variant X1, mRNA protein MOR1(LOC102659664) coding protein psRNATarget
XM_003534913.2
ncRNA:24   UCUCAAAUGUAAGUUUCUGCCAAU   1
  |||*|*||*=||||||||||||||
targets:130   AGAUUGUAAGUUCAAAGACGGUUA   153

3.0 PREDICTED: Glycine max uncharacterized LOC100781107 (LOC100781107), mRNA uncharacterized LOC100781107(LOC100781107) coding protein psRNATarget