Search result

BaseInfo

ncRNA ID	novel_gma_miR8534
Species	Glycine max
Class	miRNA
Genome position	Chr10:6752368-6752490 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451621
Length	23
Mature sequence(if miRNA)	1 - AUGAUGAGUUAAUGAUAGUUGAG - 23
Stem-loop(if miRNA)	A    --  GU    -         ------       U    CA    -UU   UGA          UGAU  GA  UAAU GAUAGUUGA      GAUAUUU AAAA  UAAU   GCU   UGAAUCUUU  ||||  ||  |||| |||||||||      ||||||| ||||  ||||   |||   ||||||||U  ACUA  UU  AUUA CUGUUAACU      UUAUAAA UUUU  AUUA   UGG   ACUUAGAGA -    AU  UG    U         UUAAUU       U    AA    UGU   -UA
Stem-loop sequence	AUGAUGAGUUAAUGAUAGUUGAGAUAUUUUAAAACAUAAUUUGCUUGAUGAAUCUUUUAGAGAUUCAAUGGUUGUAUUAAAUUUUUAAAUAUUUUAAUUUCAAUUGUCUAUUAGUUUUAAUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AJ401230.1	ncRNA:23   GAGUUGAUAGUAAUUGAGUAGUA   1   =**=|||||*||||=|||||||| targets:604   UAAGACUAUGAUUAGCUCAUCAU   626 Target Full Sequence	2.5	Glycine max partial mRNA for selenium binding protein (sbp gene)	NA	coding protein	psRNATarget
XM_003531165.3	ncRNA:23   GAGUUGAUAGUAAUUGAGUAGUA   1   =**=|||||*||||=|||||||| targets:778   UAAGACUAUGAUUAGCUCAUCAU   800 Target Full Sequence	2.5	PREDICTED: Glycine max selenium-binding protein 1 (LOC606297), mRNA	selenium-binding protein 1(LOC606297)	coding protein	psRNATarget
XM_003524873.3	ncRNA:23   GAGUUGAUAGUAAUUGAGUAGUA   1   =**=|||||*||||=|||||||| targets:727   UAAGACUAUGAUUAGCUCAUCAU   749 Target Full Sequence	2.5	PREDICTED: Glycine max selenium-binding protein 2-like (LOC100813286), transcript variant X1, mRNA	selenium-binding protein 2-like(LOC100813286)	coding protein	psRNATarget
XM_014775679.1	ncRNA:23   GAGUUGAUAGUAAUUGAGUAGUA   1   =**=|||||*||||=|||||||| targets:796   UAAGACUAUGAUUAGCUCAUCAU   818 Target Full Sequence	2.5	PREDICTED: Glycine max selenium-binding protein 2-like (LOC100813286), transcript variant X2, mRNA	selenium-binding protein 2-like(LOC100813286)	coding protein	psRNATarget