ncRNA ID | novel_gma_miR8521 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr7:13102385-13102530 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451620 |
Length | 22 |
Mature sequence(if miRNA) | 1 - UUGGGGACCAAAUUGAUUCAUU - 22 |
Stem-loop(if miRNA) |
--UAAU                   ---     A  GU           AC             ----AU     A       UCAAUUUGGUUCUCAAAUU   UUUAA AG  UCAAUUUGGUC  CAAGUUCUUAAAA      AAAUC A       |||||||||||||||||||   ||||| ||  |||||||||||  |||||||||||||      ||||| U       AGUUAAACCAGGGGUUUAA   AAGUU UC  GGUUAAACUAG  GUUCAAGAAUUUU      UUUGG U UUACUU                   UAA     G  AG           AA             AAAACC     U |
Stem-loop sequence | UAAUUCAAUUUGGUUCUCAAAUUUUUAAAAGGUUCAAUUUGGUCACCAAGUUCUUAAAAAUAAAUCAAUUUGGUUUCCAAAAUUUUAAGAACUUGAAGAUCAAAUUGGGACUGUUGAAAAUAAUUUGGGGACCAAAUUGAUUCAUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003547028.3 |
|
2.5 | PREDICTED: Glycine max probable protein phosphatase 2C 62 (LOC100815469), transcript variant X2, mRNA | probable protein phosphatase 2C 62(LOC100815469) | coding protein | psRNATarget | |||||||||
XM_014768080.1 |
|
2.5 | PREDICTED: Glycine max probable protein phosphatase 2C 62 (LOC100815469), transcript variant X1, mRNA | probable protein phosphatase 2C 62(LOC100815469) | coding protein | psRNATarget |