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BaseInfo

ncRNA ID novel_gma_miR8518
Species Glycine max
Class miRNA
Genome position Chr7:21549499-21549582 [+]
Reference genome Glycine_max_v2.0
Source SRR1451620
Length 21
Mature sequence(if miRNA) 1 - AUUCUAAGACGGUUCUUAACU - 21
Stem-loop(if miRNA) --                         CC      A    GG
  AUUCUAAGACGGUUCUUAACUAAGA  UGUCUU GAAA  U
  |||||||||||||||||||||||||  |||||| ||||
  UAAGAUUCUGUCAAGAAUUGAUUUU  GCAGAA CUUU  A
AG                         UA      A    AC
Stem-loop sequence AUUCUAAGACGGUUCUUAACUAAGACCUGUCUUAGAAAGGUACAUUUCAAAGACGAUUUUUAGUUAAGAACUGUCUUAGAAUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014762037.1
ncRNA:21   UCAAUUCUUGGCAGAAUCUUA   1
  *||*|||=|||||||||||||
targets:884   UGUAAAGGACCGUCUUAGAAU   904

2.0 PREDICTED: Glycine max putative DUF21 domain-containing protein At1g03270 (LOC102659380), mRNA putative DUF21 domain-containing protein At1g03270(LOC102659380) coding protein psRNATarget
XM_014773514.1
ncRNA:21   UCAAUUCUUGGCAGAAUCUUA   1
  *||||**||||||||||||||
targets:374   UGUUAUUAACCGUCUUAGAAU   394

2.0 PREDICTED: Glycine max uncharacterized LOC106798042 (LOC106798042), transcript variant X1, mRNA uncharacterized LOC106798042(LOC106798042) coding protein psRNATarget
XM_006599236.2
ncRNA:21   UCAAUUCUUGGCAGAAUCUUA   1
  **||*|||||||||||||||*
targets:399   CUUUUAGAACCGUCUUAGAAA   419

2.0 PREDICTED: Glycine max uncharacterized LOC100788736 (LOC100788736), transcript variant X1, mRNA uncharacterized LOC100788736(LOC100788736) coding protein psRNATarget
XM_014769760.1
ncRNA:21   UCAAUUCUUGGCAGAAUCUUA   1
  **||||*||||||||||||*|
targets:1862   UUUUAAUAACCGUCUUAGAUU   1882

2.5 PREDICTED: Glycine max cucumisin-like (LOC100816048), mRNA cucumisin-like(LOC100816048) coding protein psRNATarget