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BaseInfo

ncRNA ID novel_gma_miR8515
Species Glycine max
Class miRNA
Genome position Chr5:4900167-4900255 [-]
Reference genome Glycine_max_v2.0
Source SRR1451620;SRR1451625
Length 24
Mature sequence(if miRNA) 66 - UGCAUUUGGAUAGAGAAUUUUAAC - 89
Stem-loop(if miRNA) --U     UG     A        AC   -     --GU     AU
   GCAUU  GAUAG GAAUUUUA  UGA GGAAA    AAUUU  C
   |||||  ||||| ||||||||  ||| |||||    |||||
   UGUAA  UUGUU CUUAAGAU  ACU UCUUU    UUAAG  A
UUU     GU     A        CU   G     AAGU     AG
Stem-loop sequence UGCAUUUGGAUAGAGAAUUUUAACUGAGGAAAGUAAUUUAUCAGAGAAUUUGAAUUUCUGUCAUCUAGAAUUCAUUGUUUGAAUGUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT096167.1
ncRNA:24   CAAUUUUAAGAGAUAGGUUUACGU   1
  ||**|||||*|||||=||||||||
targets:607   GUGCAAAUUGUCUAUUCAAAUGCA   630

2.5 Soybean clone JCVI-FLGm-25F11 unknown mRNA NA coding protein psRNATarget
NM_001317576.1
ncRNA:24   CAAUUUUAAGAGAUAGGUUUACGU   1
  ||**|||||*|||||=||||||||
targets:607   GUGCAAAUUGUCUAUUCAAAUGCA   630

2.5 Glycine max uncharacterized LOC100793230 (LOC100793230), mRNA uncharacterized LOC100793230(LOC100793230) coding protein psRNATarget
NM_001317593.1
ncRNA:24   CAAUUUUAAGAGAUAGGUUUACGU   1
  ||**|||||*|||||=||||||||
targets:602   GUGCAAAUUGUCUAUUCAAAUGCA   625

2.5 Glycine max uncharacterized LOC100794016 (LOC100794016), mRNA uncharacterized LOC100794016(LOC100794016) coding protein psRNATarget
BT097526.1
ncRNA:24   CAAUUUUAAGAGAUAGGUUUACGU   1
  ||**|||||*|||||=||||||||
targets:604   GUGCAAAUUGUCUAUUCAAAUGCA   627

2.5 Soybean clone JCVI-FLGm-22K17 unknown mRNA NA coding protein psRNATarget
XM_006586669.2
ncRNA:24   CAAUUUUAAGAGAUAGGUUUACGU   1
  ||**|||||*|||||=||||||||
targets:665   GUGCAAAUUGUCUAUUCAAAUGCA   688

2.5 PREDICTED: Glycine max uncharacterized LOC100794016 (LOC100794016), transcript variant X2, mRNA uncharacterized LOC100794016(LOC100794016) coding protein psRNATarget
XM_014761814.1
ncRNA:24   CAAUUUUAAGAGAUAGGUUUACGU   1
  ||**|||||*|||||=||||||||
targets:712   GUGCAAAUUGUCUAUUCAAAUGCA   735

2.5 PREDICTED: Glycine max uncharacterized LOC100794016 (LOC100794016), transcript variant X1, mRNA uncharacterized LOC100794016(LOC100794016) coding protein psRNATarget
XM_006592914.2
ncRNA:24   CAAUUUUAAGAGAUAGGUUUACGU   1
  ||**|||||*|||||=||||||||
targets:685   GUGCAAAUUGUCUAUUCAAAUGCA   708

2.5 PREDICTED: Glycine max uncharacterized LOC100793230 (LOC100793230), transcript variant X3, mRNA uncharacterized LOC100793230(LOC100793230) coding protein psRNATarget
XM_014765125.1
ncRNA:24   CAAUUUUAAGAGAUAGGUUUACGU   1
  ||**|||||*|||||=||||||||
targets:710   GUGCAAAUUGUCUAUUCAAAUGCA   733

2.5 PREDICTED: Glycine max uncharacterized LOC100793230 (LOC100793230), transcript variant X2, mRNA uncharacterized LOC100793230(LOC100793230) coding protein psRNATarget
XM_014765124.1
ncRNA:24   CAAUUUUAAGAGAUAGGUUUACGU   1
  ||**|||||*|||||=||||||||
targets:757   GUGCAAAUUGUCUAUUCAAAUGCA   780

2.5 PREDICTED: Glycine max uncharacterized LOC100793230 (LOC100793230), transcript variant X1, mRNA uncharacterized LOC100793230(LOC100793230) coding protein psRNATarget