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BaseInfo

ncRNA ID novel_gma_miR8494
Species Glycine max
Class miRNA
Genome position Chr19:3494794-3494881 [-]
Reference genome Glycine_max_v2.0
Source SRR1451620
Length 22
Mature sequence(if miRNA) 67 - UUUCUGUUUUCAAAGAUUUGUA - 88
Stem-loop(if miRNA) --           AAA          --    ---    UG    C
  UUUCUGUUUUC   GAUUUGUACA  AGAC   ACAA  AAAG G
  |||||||||||   ||||||||||  ||||   ||||  |||| A
  AAGGACAAAAG   CUAAACAUGU  UUUG   UGUU  UUUC U
CA           CUG          CC    UCU    GU    U
Stem-loop sequence UUUCUGUUUUCAAAGAUUUGUACAAGACACAAUGAAAGCGAUUCUUUUGUUGUUCUGUUUCCUGUACAAAUCGUCGAAAACAGGAAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014763007.1
ncRNA:22   AUGUUUAGAAACUUUUGUCUUU   1
  |*||||*|||||||||||||||
targets:2020   UCCAAAACUUUGAAAACAGAAA   2041

1.0 PREDICTED: Glycine max ethylene-insensitive protein 2-like (LOC100781309), transcript variant X3, mRNA ethylene-insensitive protein 2-like(LOC100781309) coding protein psRNATarget
XM_006588736.2
ncRNA:22   AUGUUUAGAAACUUUUGUCUUU   1
  |*||||*|||||||||||||||
targets:2276   UCCAAAACUUUGAAAACAGAAA   2297

1.0 PREDICTED: Glycine max ethylene-insensitive protein 2-like (LOC100781309), transcript variant X2, mRNA ethylene-insensitive protein 2-like(LOC100781309) coding protein psRNATarget
XM_006588735.2
ncRNA:22   AUGUUUAGAAACUUUUGUCUUU   1
  |*||||*|||||||||||||||
targets:2383   UCCAAAACUUUGAAAACAGAAA   2404

1.0 PREDICTED: Glycine max ethylene-insensitive protein 2-like (LOC100781309), transcript variant X1, mRNA ethylene-insensitive protein 2-like(LOC100781309) coding protein psRNATarget
XM_003542488.3
ncRNA:22   AUGUUUAGAAACUUUUGUCUUU   1
  |*||||*|||||||||||||||
targets:2510   UCCAAAACUUUGAAAACAGAAA   2531

1.0 PREDICTED: Glycine max ethylene-insensitive protein 2-like (LOC100801190), mRNA ethylene-insensitive protein 2-like(LOC100801190) coding protein psRNATarget
XM_014772170.1
ncRNA:22   AU--GUUUAGAAACUUUUGUCUUU   1
  ||--|||||||||||||||||=||
targets:1486   UAUUCAAAUCUUUGAAAACAGGAA   1509

1.5 PREDICTED: Glycine max F-box protein At5g03970-like (LOC100810374), transcript variant X2, mRNA F-box protein At5g03970-like(LOC100810374) coding protein psRNATarget
XM_003554667.3
ncRNA:22   AU--GUUUAGAAACUUUUGUCUUU   1
  ||--|||||||||||||||||=||
targets:1487   UAUUCAAAUCUUUGAAAACAGGAA   1510

1.5 PREDICTED: Glycine max F-box protein At5g03970-like (LOC100810374), transcript variant X1, mRNA F-box protein At5g03970-like(LOC100810374) coding protein psRNATarget
XM_006604078.2
ncRNA:22   AUGUUUAGAAACUUUUGUCUUU   1
  |*|||||||||||||||||=||
targets:306   UUCAAAUCUUUGAAAACAGGAA   327

1.5 PREDICTED: Glycine max putative nuclease HARBI1 (LOC102660080), mRNA putative nuclease HARBI1(LOC102660080) coding protein psRNATarget
XM_003546580.3
ncRNA:22   AUGUUUAGAAACUUUUGUCUUU   1
  ***|||||||||||||*|||||
targets:2425   AUGAAAUCUUUGAAAAGAGAAA   2446

1.5 PREDICTED: Glycine max trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like (LOC100785885), transcript variant X3, mRNA trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like(LOC100785885) coding protein psRNATarget
XM_006597914.2
ncRNA:22   AUGUUUAGAAACUUUUGUCUUU   1
  ***|||||||||||||*|||||
targets:2506   AUGAAAUCUUUGAAAAGAGAAA   2527

1.5 PREDICTED: Glycine max trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like (LOC100785885), transcript variant X2, mRNA trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like(LOC100785885) coding protein psRNATarget
XM_006597913.2
ncRNA:22   AUGUUUAGAAACUUUUGUCUUU   1
  ***|||||||||||||*|||||
targets:2517   AUGAAAUCUUUGAAAAGAGAAA   2538

1.5 PREDICTED: Glycine max trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like (LOC100785885), transcript variant X1, mRNA trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like(LOC100785885) coding protein psRNATarget
XM_014772923.1
ncRNA:22   AUGUUUAGAAACUUUUGUCUUU   1
  *||=|||=*|||||||||||||
targets:956   GACGAAUUAUUGAAAACAGAAA   977

3.0 PREDICTED: Glycine max abscisic acid 8'-hydroxylase 3-like (LOC100810187), mRNA abscisic acid 8'-hydroxylase 3-like(LOC100810187) coding protein psRNATarget
XM_014768581.1
ncRNA:22   AUGUUUAGAAACUUUUGUCUUU   1
  *||=|||=*|||||||||||||
targets:449   GACGAAUUAUUGAAAACAGAAA   470

3.0 PREDICTED: Glycine max abscisic acid 8'-hydroxylase 3-like (LOC102663998), transcript variant X2, mRNA abscisic acid 8'-hydroxylase 3-like(LOC102663998) coding protein psRNATarget
XM_003554838.3
ncRNA:22   AUGU-UUAGAAACUUUUGUCUUU   1
  *=||-||*|||||||||||||||
targets:250   GGCAGAAGCUUUGAAAACAGAAA   272

3.0 PREDICTED: Glycine max putative NAC domain-containing protein 94 (LOC100778120), mRNA putative NAC domain-containing protein 94(LOC100778120) coding protein psRNATarget
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