Search result

BaseInfo

ncRNA ID	novel_gma_miR8484
Species	Glycine max
Class	miRNA
Genome position	Chr1:40624574-40624654 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451620
Length	21
Mature sequence(if miRNA)	1 - AACCGAUGUAGAAAUCUGCCU - 21
Stem-loop(if miRNA)	--               C  C U               GAC   AACCGAUGUAGAAAU UG C AUUUUAAGACGGGUU   C   ||||||||||||||| || | |||||||||||||||   UUGGCUACAUCUUUA AC G UAAGAUUCUGCCCAA   U UG               A  C -               ACC
Stem-loop sequence	AACCGAUGUAGAAAUCUGCCUAUUUUAAGACGGGUUGACCUCCAAACCCGUCUUAGAAUGCCAAAUUUCUACAUCGGUUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006603993.2	ncRNA:21   UCCGUCUAAAGAUGUAGCCAA   1   **|||||||||||||||*||| targets:583   UUGCAGAUUUCUACAUCUGUU   603 Target Full Sequence	1.5	PREDICTED: Glycine max glutamate synthase [NADH], amyloplastic (LOC100784900), transcript variant X2, mRNA	glutamate synthase [NADH], amyloplastic(LOC100784900)	coding protein	psRNATarget
XM_006603994.2	ncRNA:21   UCCGUCUAAAGAUGUAGCCAA   1   **|||||||||||||||*||| targets:970   UUGCAGAUUUCUACAUCUGUU   990 Target Full Sequence	1.5	PREDICTED: Glycine max glutamate synthase [NADH], amyloplastic (LOC100784900), transcript variant X3, mRNA	glutamate synthase [NADH], amyloplastic(LOC100784900)	coding protein	psRNATarget
XM_003553791.3	ncRNA:21   UCCGUCUAAAGAUGUAGCCAA   1   **|||||||||||||||*||| targets:1363   UUGCAGAUUUCUACAUCUGUU   1383 Target Full Sequence	1.5	PREDICTED: Glycine max glutamate synthase [NADH], amyloplastic (LOC100784900), transcript variant X1, mRNA	glutamate synthase [NADH], amyloplastic(LOC100784900)	coding protein	psRNATarget
XM_014774861.1	ncRNA:21   UCCGUCUAAAGAUGUAGCCAA   1   |*|||||||*||||||||||* targets:1284   AAGCAGAUUACUACAUCGGUG   1304 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106798441 (LOC106798441), transcript variant X3, mRNA	uncharacterized LOC106798441(LOC106798441)	coding protein	psRNATarget
XM_014766824.1	ncRNA:21   UCCGUCUAAAGAUGUAGCCAA   1   ***||||||||||||||*||| targets:1335   UUACAGAUUUCUACAUCUGUU   1355 Target Full Sequence	2.5	PREDICTED: Glycine max glutamate synthase [NADH], amyloplastic-like (LOC100809905), mRNA	glutamate synthase [NADH], amyloplastic-like(LOC100809905)	coding protein	psRNATarget