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BaseInfo

ncRNA ID novel_gma_miR8478
Species Glycine max
Class miRNA
Genome position Chr12:2634722-2634817 [-]
Reference genome Glycine_max_v2.0
Source SRR1451620
Length 21
Mature sequence(if miRNA) 76 - AUCAUCCAAUCACAACCUACC - 96
Stem-loop(if miRNA) --     C         CC    AU  A    A      --U     UUU
  AUCAU CAAUCACAA  UACC  GU GGAU AGUUUG   UGAUU   A
  ||||| |||||||||  ||||  || |||| ||||||   |||||
  UAGUA GUUAGUGUU  GUGG  CA CUUA UUAAAU   AUUAA   A
GA     A         UA    --  A    A      UCU     UAA
Stem-loop sequence AUCAUCCAAUCACAACCUACCAUGUAGGAUAAGUUUGUUGAUUUUUAAAAUAAUUAUCUUAAAUUAAUUCAACGGUGAUUUGUGAUUGAAUGAUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003542461.3
ncRNA:21   CCAUCCAACACUAACCUACUA   1
  |*|=||||||||||*||||||
targets:1328   GUUGGGUUGUGAUUAGAUGAU   1348

2.5 PREDICTED: Glycine max syntaxin-71-like (LOC100786529), mRNA syntaxin-71-like(LOC100786529) coding protein psRNATarget
XM_003542461.3
ncRNA:21   CCAUCCAACACUAACCUACUA   1
  **|=||||||||||*||||||
targets:1366   ACUGGGUUGUGAUUAGAUGAU   1386

2.5 PREDICTED: Glycine max syntaxin-71-like (LOC100786529), mRNA syntaxin-71-like(LOC100786529) coding protein psRNATarget
XM_003542461.3
ncRNA:21   CCAUCCAACACUAACCUACUA   1
  **|=||||||||||*||||||
targets:1404   ACUGGGUUGUGAUUAGAUGAU   1424

2.5 PREDICTED: Glycine max syntaxin-71-like (LOC100786529), mRNA syntaxin-71-like(LOC100786529) coding protein psRNATarget