Search result

BaseInfo

ncRNA ID	novel_gma_miR8468
Species	Glycine max
Class	miRNA
Genome position	Chr7:35864713-35864893 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451619;SRR1451623
Length	21
Mature sequence(if miRNA)	1 - UACCUUCUUAUUUUCUUCUCA - 21
Stem-loop(if miRNA)	--               A                    CCCAC          CAA   A    CUUCAACUUUUUUAA  GCUCUCUCAUUU   AGAAGAAAGUAAGAA GUAAAAUGAAUUAAAUUUUU     AAGUUAAAAU   CUU UGCA               GA            A   ||||||||||||||| ||||||||||||||||||||     ||||||||||   ||| ||||               ||            A   UCUUCUUUUAUUCUU CAUUUUACUUAAUUUGAAGA     UUCAAUUUUA   GAA ACGU               GU            C AC               C                    --AAA          AUC   C    ----AUUCAAUUUUA  CAAAAACCUUUU
Stem-loop sequence	AGAAGAAAGUAAGAAAGUAAAAUGAAUUAAAUUUUUCCCACAAGUUAAAAUCAACUUAUGCACUUCAACUUUUUUAAGAGCUCUCUCAUUUAACUUUUCCAAAAACUGAUUUUAACUUAUGCACAAGCUAAUUUUAACUUAAAAGAAGUUUAAUUCAUUUUACCUUCUUAUUUUCUUCUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014776866.1	ncRNA:21   ACUCUUCUUUUAUUCUUCCAU   1   *|||||||||||||||||||| targets:302   GGAGAAGAAAAUAAGAAGGUA   322 Target Full Sequence	0.0	PREDICTED: Glycine max U-box domain-containing protein 35-like (LOC100818628), transcript variant X2, mRNA	U-box domain-containing protein 35-like(LOC100818628)	coding protein	psRNATarget
XM_006583837.2	ncRNA:21   ACUCUUCUUUUAUUCUUCCAU   1   **||||||||||||||||||| targets:3818   GUAGAAGAAAAUAAGAAGGUA   3838 Target Full Sequence	0.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g09900-like (LOC100775884), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At1g09900-like(LOC100775884)	coding protein	psRNATarget
XM_006583838.2	ncRNA:21   ACUCUUCUUUUAUUCUUCCAU   1   **||||||||||||||||||| targets:3675   GUAGAAGAAAAUAAGAAGGUA   3695 Target Full Sequence	0.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g09900-like (LOC100775884), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At1g09900-like(LOC100775884)	coding protein	psRNATarget
XM_006574366.2	ncRNA:21   ACUCUUCUUUUAUUCUUCCAU   1   *|||*|||||||||||||||| targets:1288   GGAGUAGAAAAUAAGAAGGUA   1308 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100798622 (LOC100798622), transcript variant X1, mRNA	uncharacterized LOC100798622(LOC100798622)	coding protein	psRNATarget
XM_014768127.1	ncRNA:21   ACUCUUCUUUUAUUCUUCCAU   1   *||||||||||||||||*||| targets:1533   GGAGAAGAAAAUAAGAAAGUA   1553 Target Full Sequence	1.5	PREDICTED: Glycine max E3 ubiquitin-protein ligase RGLG2-like (LOC100803177), transcript variant X4, mRNA	E3 ubiquitin-protein ligase RGLG2-like(LOC100803177)	coding protein	psRNATarget
XM_014768125.1	ncRNA:21   ACUCUUCUUUUAUUCUUCCAU   1   *||||||||||||||||*||| targets:1461   GGAGAAGAAAAUAAGAAAGUA   1481 Target Full Sequence	1.5	PREDICTED: Glycine max E3 ubiquitin-protein ligase RGLG2-like (LOC100803177), transcript variant X1, mRNA	E3 ubiquitin-protein ligase RGLG2-like(LOC100803177)	coding protein	psRNATarget
XM_014768128.1	ncRNA:21   ACUCUUCUUUUAUUCUUCCAU   1   *||||||||||||||||*||| targets:1458   GGAGAAGAAAAUAAGAAAGUA   1478 Target Full Sequence	1.5	PREDICTED: Glycine max E3 ubiquitin-protein ligase RGLG2-like (LOC100803177), transcript variant X5, mRNA	E3 ubiquitin-protein ligase RGLG2-like(LOC100803177)	coding protein	psRNATarget
AK244400.1	ncRNA:21   ACUCUUCUUUUAUUCUUCCAU   1   **|||||||||||||||*||| targets:1513   CAAGAAGAAAAUAAGAAAGUA   1533 Target Full Sequence	1.5	Glycine max cDNA, clone: GMFL01-02-O14	NA	coding protein	psRNATarget
XM_014764118.1	ncRNA:21   ACUCUUCUUUUAUUCUUCCAU   1   **||||||||||||||||*|| targets:923   GAAGAAGAAAAUAAGAAGAUA   943 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100779185 (LOC100779185), transcript variant X3, mRNA	uncharacterized LOC100779185(LOC100779185)	coding protein	psRNATarget
BT094177.1	ncRNA:21   ACUCUUCUUUUAUUCUUCCAU   1   **|||||||||||||||||*| targets:130   GAAGAAGAAAAUAAGAAGGGA   150 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-14B17 unknown mRNA	NA	coding protein	psRNATarget
XM_014774461.1	ncRNA:21   ACUCUUCUUUUAUUCUUCCAU   1   *|||||||||||||||=|||= targets:6   AGAGAAGAAAAUAAGAGGGUG   26 Target Full Sequence	2.5	PREDICTED: Glycine max protein MRG2-like (LOC100777259), transcript variant X1, mRNA	protein MRG2-like(LOC100777259)	coding protein	psRNATarget
XM_003523934.3	ncRNA:21   ACUCUUCUUUUAUUCUUCCAU   1   *|||||||||||||||=|||= targets:5   AGAGAAGAAAAUAAGAGGGUG   25 Target Full Sequence	2.5	PREDICTED: Glycine max protein MRG2-like (LOC100777259), transcript variant X2, mRNA	protein MRG2-like(LOC100777259)	coding protein	psRNATarget
FJ014879.1	ncRNA:21   ACUCUUCUUUUAUUCUUCCAU   1   *||||||||||*||||||||= targets:391   CGAGAAGAAAAAAAGAAGGUG   411 Target Full Sequence	2.5	Glycine max clone cw18 resistance protein mRNA, complete cds	NA	coding protein	psRNATarget
BT093901.1	ncRNA:21   ACUCUUCUUUUAUUCUUCCAU   1   *|||||||||||||||||*|* targets:496   GGAGAAGAAAAUAAGAAGCUU   516 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-14G22 unknown mRNA	NA	coding protein	psRNATarget
XM_014765747.1	ncRNA:21   ACUCUUCUUUUAUUCUUCCAU   1   **|||||=||||||||||*|| targets:711   GAAGAAGGAAAUAAGAAGAUA   731 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100781365 (LOC100781365), transcript variant X5, mRNA	uncharacterized LOC100781365(LOC100781365)	coding protein	psRNATarget
XM_006606529.2	ncRNA:21   ACUCUUCUUUUAUUCUUCCAU   1   *||||||*|||||||||*||| targets:1045   AGAGAAGUAAAUAAGAAAGUA   1065 Target Full Sequence	2.5	PREDICTED: Glycine max clathrin interactor EPSIN 2-like (LOC100813981), transcript variant X2, mRNA	clathrin interactor EPSIN 2-like(LOC100813981)	coding protein	psRNATarget
XM_006600567.2	ncRNA:21   ACUCUUCUUUUAUUCUUCCAU   1   *||*|||||||||||||||*| targets:3197   AGAAAAGAAAAUAAGAAGGAA   3217 Target Full Sequence	2.5	PREDICTED: Glycine max probable apyrase 7 (LOC100775757), mRNA	probable apyrase 7(LOC100775757)	coding protein	psRNATarget