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BaseInfo

ncRNA ID ath-miR8165
Species Arabidopsis thaliana
Class miRNA
Genome position chr3:16538489-16538625 [-]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 22 - AAUGGAGGCAAGUGUGAAGGA - 42
Stem-loop(if miRNA)      C    AA    A    AAUUA  G    A      -A    A       GU      UC    AAC
GAUUG UAUA  GUGU AAAU     UC UUCA ACUUGU  CUAU UGAUUUG  GUUUUG  UUUA   U
||||| ||||  |||| ||||     || |||| ||||||  |||| |||||||  ||||||  ||||
UUAAC AUGU  CACA UUUA     AG AAGU UGAACG  GGUA AUUAAAU  CAAAAU  AAAU   C
     -    AG    C    ----G  G    G      GA    -       AU      GA    CUA
Stem-loop sequence GAUUGCUAUAAAGUGUAAAAUAAUUAUCGUUCAAACUUGUACUAUAUGAUUUGGUGUUUUGUCUUUAAACUCAUCUAAAAGUAAAACUAUAAAUUAAUGGAGGCAAGUGUGAAGGAGAUUUCACACGAUGUACAAUU

Reference

1 PMID:24119003
"Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots";
Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA;
BMC Genomics. 14:701(2013).