Search result

BaseInfo

ncRNA ID novel_gma_miR8445
Species Glycine max
Class miRNA
Genome position Chr13:2146354-2146460 [+]
Reference genome Glycine_max_v2.0
Source SRR1294476;SRR1294477
Length 24
Mature sequence(if miRNA) 84 - AGAGAUAACACAAAAAAAGGACAG - 107
Stem-loop(if miRNA) --   AUC              -   CGUUUUGAUU            A        AC
  GUU   UUUUUUGUGUUGUC CUU          CAAAACGACGUC UUUUGAAA  A
  |||   |||||||||||||| |||          |||||||||||| ||||||||  C
  CAG   AAAAAACACAAUAG GAG          GUUUUGUUGCAG AAAACUUU  A
GA   -GA              A   ----------            C        CA
Stem-loop sequence GUUAUCUUUUUUGUGUUGUCCUUCGUUUUGAUUCAAAACGACGUCAUUUUGAAAACACAACUUUCAAAACGACGUUGUUUUGGAGAGAUAACACAAAAAAAGGACAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006583765.2
ncRNA:24   GACAGGAAAAAAACACAAUAGAGA   1
  ||*||=*|||*|||||||||||||
targets:807   CUCUCUCUUUCUUGUGUUAUCUCU   830

3.0 PREDICTED: Glycine max protein SMG7L-like (LOC100786043), transcript variant X5, mRNA protein SMG7L-like(LOC100786043) coding protein psRNATarget