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BaseInfo

ncRNA ID novel_gma_miR8443
Species Glycine max
Class miRNA
Genome position Chr17:22315234-22315317 [+]
Reference genome Glycine_max_v2.0
Source SRR1451619;SRR1451620
Length 21
Mature sequence(if miRNA) 64 - CCAUCCCCAAUUGCCCACCUU - 84
Stem-loop(if miRNA) --     -    C   U     --C  AAAAC  AUAUCCCAUU
  GGUGG CAAU GGG GAUGG   GC     AA          U
  ||||| |||| ||| |||||   ||     ||          C
  CCACC GUUA CCC CUACC   CG     CG          C
UU     C    A   -     ACA  -AAUA  GACCUGAACA
Stem-loop sequence GGUGGCAAUCGGGUGAUGGCGCAAAACAAAUAUCCCAUUUCCACAAGUCCAGGCAUAAGCACACCAUCCCCAAUUGCCCACCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003534663.3
ncRNA:21   UUCCACCCGUUAACCCCUACC   1
  |*||*||||||*|||||||||
targets:1170   AUGGGGGGCAAGUGGGGAUGG   1190

2.5 PREDICTED: Glycine max probable F-box protein At4g22030 (LOC100801646), mRNA probable F-box protein At4g22030(LOC100801646) coding protein psRNATarget
XM_003534659.3
ncRNA:21   UUCCACCCGUUAACCCCUACC   1
  |*|||||*|||*|||||||||
targets:1327   AUGGUGGACAAGUGGGGAUGG   1347

2.5 PREDICTED: Glycine max probable F-box protein At4g22030 (LOC100799496), mRNA probable F-box protein At4g22030(LOC100799496) coding protein psRNATarget