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BaseInfo

ncRNA ID novel_gma_miR8442
Species Glycine max
Class miRNA
Genome position Chr1:33724766-33724860 [-]
Reference genome Glycine_max_v2.0
Source SRR1451619
Length 21
Mature sequence(if miRNA) 1 - AUAAUAACUGUCUUUGAAUGU - 21
Stem-loop(if miRNA) --                  CU    A     A        A G  UC
  AUUCAAAGACGGUUAUUA  UAAU ACCGU UUUGAAUG U CG  U
  ||||||||||||||||||  |||| ||||| |||||||| | ||
  UAAGUUUCUGUCAAUAAU  AUUA UGGCA AAACUUAC A GU  G
UG                  AC    C     G        - G  UC
Stem-loop sequence AUUCAAAGACGGUUAUUACUUAAUAACCGUAUUUGAAUGAUGCGUCUGCUUGGACAUUCAAAGACGGUCAUUACAUAAUAACUGUCUUUGAAUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006577997.2
ncRNA:21   UGUAAGUUUCUGUCAAUAAUA   1
  |*|||=*||||||||||||||
targets:397   AAAUUUCAAGACAGUUAUUAU   417

2.0 PREDICTED: Glycine max cysteine-rich and transmembrane domain-containing protein A-like (LOC102664926), mRNA cysteine-rich and transmembrane domain-containing protein A-like(LOC102664926) coding protein psRNATarget
XM_014775607.1
ncRNA:21   UGUAAGUUUCUGUCAAUAAUA   1
  ||||||||||||=|||||||*
targets:1488   ACAUUCAAAGACGGUUAUUAA   1508

2.5 PREDICTED: Glycine max protein MOR1 (LOC102659664), transcript variant X1, mRNA protein MOR1(LOC102659664) coding protein psRNATarget
XM_014775607.1
ncRNA:21   UGUAAGUUUCUGUCAAUAAUA   1
  ||||||||||||=|||||||*
targets:1543   ACAUUCAAAGACGGUUAUUAA   1563

2.5 PREDICTED: Glycine max protein MOR1 (LOC102659664), transcript variant X1, mRNA protein MOR1(LOC102659664) coding protein psRNATarget