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BaseInfo

ncRNA ID novel_gma_miR8440
Species Glycine max
Class miRNA
Genome position Chr16:3447098-3447240 [+]
Reference genome Glycine_max_v2.0
Source SRR1451619;SRR1451620;SRR1451623
Length 21
Mature sequence(if miRNA) 123 - AGCUCAAUUCAUUUUACCUUC - 143
Stem-loop(if miRNA) --              U        C             A     A       -AA    -CAU     UUC
  AGGUAAAAUGAAUU AGUUUCUC UAUAAGUUAAAAU AACUU UGCACUU   CUUU    AGAAG   U
  |||||||||||||| |||||||| ||||||||||||| ||||| |||||||   ||||    |||||   C
  UCCAUUUUACUUAA UCGAAGAG GUAUUUAAUUUUA UUGAA ACGUGAA   GAAA    UCUUC   U
CU              C        A             A     C       AUC    AACC     UAC
Stem-loop sequence AGGUAAAAUGAAUUUAGUUUCUCCUAUAAGUUAAAAUAAACUUAUGCACUUAACUUUCAUAGAAGUUCUCUCAUCUUCUCCAAAAAGCUAAAGUGCACAAGUUAAUUUUAAUUUAUGAGAGAAGCUCAAUUCAUUUUACCUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT095764.1
ncRNA:21   CUUCCAUUUUACUUAACUCGA   1
  *||||||||||||||||||||
targets:967   UAAGGUAAAAUGAAUUGAGCU   987

0.0 Soybean clone JCVI-FLGm-15K19 unknown mRNA NA coding protein psRNATarget
XM_003518975.3
ncRNA:21   CUUCCAUUUUACUUAACUCGA   1
  *||||||||||||||||||||
targets:1017   UAAGGUAAAAUGAAUUGAGCU   1037

0.0 PREDICTED: Glycine max binding partner of ACD11 1 (LOC100805907), transcript variant X3, mRNA binding partner of ACD11 1(LOC100805907) coding protein psRNATarget
XM_006574485.2
ncRNA:21   CUUCCAUUUUACUUAACUCGA   1
  *||||||||||||||||||||
targets:1038   UAAGGUAAAAUGAAUUGAGCU   1058

0.0 PREDICTED: Glycine max binding partner of ACD11 1 (LOC100805907), transcript variant X2, mRNA binding partner of ACD11 1(LOC100805907) coding protein psRNATarget
XM_006574484.2
ncRNA:21   CUUCCAUUUUACUUAACUCGA   1
  *||||||||||||||||||||
targets:1050   UAAGGUAAAAUGAAUUGAGCU   1070

0.0 PREDICTED: Glycine max binding partner of ACD11 1 (LOC100805907), transcript variant X1, mRNA binding partner of ACD11 1(LOC100805907) coding protein psRNATarget
AK244400.1
ncRNA:21   CUUCCAUUUUACUUAACUCGA   1
  |||*|||||||||||||||||
targets:1527   GAAAGUAAAAUGAAUUGAGCU   1547

1.0 Glycine max cDNA, clone: GMFL01-02-O14 NA coding protein psRNATarget
XM_014762009.1
ncRNA:21   CUUCCAUUUUACUUAACUCGA   1
  *|||||||||||||||*||||
targets:609   UAAGGUAAAAUGAAUUAAGCU   629

1.5 PREDICTED: Glycine max clustered mitochondria protein-like (LOC102659429), transcript variant X2, mRNA clustered mitochondria protein-like(LOC102659429) coding protein psRNATarget
XM_014779022.1
ncRNA:21   CUUCCAUUUUACUUAACUCGA   1
  ||*||||||||||||||||=|
targets:543   GAUGGUAAAAUGAAUUGAGUU   563

2.5 PREDICTED: Glycine max cysteine synthase-like (LOC100796465), transcript variant X4, mRNA cysteine synthase-like(LOC100796465) coding protein psRNATarget
XM_014779020.1
ncRNA:21   CUUCCAUUUUACUUAACUCGA   1
  ||*||||||||||||||||=|
targets:629   GAUGGUAAAAUGAAUUGAGUU   649

2.5 PREDICTED: Glycine max cysteine synthase-like (LOC100796465), transcript variant X2, mRNA cysteine synthase-like(LOC100796465) coding protein psRNATarget
XM_014779021.1
ncRNA:21   CUUCCAUUUUACUUAACUCGA   1
  ||*||||||||||||||||=|
targets:653   GAUGGUAAAAUGAAUUGAGUU   673

2.5 PREDICTED: Glycine max cysteine synthase-like (LOC100796465), transcript variant X3, mRNA cysteine synthase-like(LOC100796465) coding protein psRNATarget
XM_003543385.3
ncRNA:21   CUUCCAUUUUACUUAACUCGA   1
  |||*|||||||||||||||=|
targets:1715   GAAAGUAAAAUGAAUUGAGUU   1735

2.5 PREDICTED: Glycine max alcohol-forming fatty acyl-CoA reductase-like (LOC100788680), mRNA alcohol-forming fatty acyl-CoA reductase-like(LOC100788680) coding protein psRNATarget
XM_014779019.1
ncRNA:21   CUUCCAUUUUACUUAACUCGA   1
  ||*||||||||||||||||=|
targets:739   GAUGGUAAAAUGAAUUGAGUU   759

2.5 PREDICTED: Glycine max cysteine synthase-like (LOC100796465), transcript variant X1, mRNA cysteine synthase-like(LOC100796465) coding protein psRNATarget
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