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BaseInfo

ncRNA ID novel_gma_miR8417
Species Glycine max
Class miRNA
Genome position Chr2:48550352-48550399 [+]
Reference genome Glycine_max_v2.0
Source SRR1451618
Length 21
Mature sequence(if miRNA) 1 - UUUUGUAGGAUUGAGUUAAGC - 21
Stem-loop(if miRNA) --      -     -  A    AGC
  UUUUGU AGGAU UG GUUA   U
  |||||| ||||| || ||||
  AGAACA UCUUG AC CAAU   C
CC      G     U  C    AUA
Stem-loop sequence UUUUGUAGGAUUGAGUUAAGCUCAUAUAACCCAUGUUCUGACAAGACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006590969.2
ncRNA:21   CGAAUUGAGUUAGGAUGUUUU   1
  |||||||||||||||||||||
targets:2525   GCUUAACUCAAUCCUACAAAA   2545

0.0 PREDICTED: Glycine max uncharacterized LOC100797428 (LOC100797428), transcript variant X3, mRNA uncharacterized LOC100797428(LOC100797428) coding protein psRNATarget
XM_006591104.2
ncRNA:21   CGAAUUGAGUUAGGAUGUUUU   1
  |=*||||||||||||||||||
targets:3367   GUCUAACUCAAUCCUACAAAA   3387

1.0 PREDICTED: Glycine max TMV resistance protein N-like (LOC100796191), mRNA TMV resistance protein N-like(LOC100796191) coding protein psRNATarget
XM_014775065.1
ncRNA:21   CGAAUUGAGUUAGGAUGUUUU   1
  |=|||||||||*|||||||||
targets:1671   GUUUAACUCAACCCUACAAAA   1691

1.5 PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X4, mRNA uncharacterized LOC102659952(LOC102659952) coding protein psRNATarget
XM_014775059.1
ncRNA:21   CGAAUUGAGUUAGGAUGUUUU   1
  |=|||||||||*|||||||||
targets:1524   GUUUAACUCAACCCUACAAAA   1544

1.5 PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X1, mRNA uncharacterized LOC102659952(LOC102659952) coding protein psRNATarget
XM_014775066.1
ncRNA:21   CGAAUUGAGUUAGGAUGUUUU   1
  |=|||||||||*|||||||||
targets:1668   GUUUAACUCAACCCUACAAAA   1688

1.5 PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X5, mRNA uncharacterized LOC102659952(LOC102659952) coding protein psRNATarget
XM_014775062.1
ncRNA:21   CGAAUUGAGUUAGGAUGUUUU   1
  |=|||||||||*|||||||||
targets:1669   GUUUAACUCAACCCUACAAAA   1689

1.5 PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X3, mRNA uncharacterized LOC102659952(LOC102659952) coding protein psRNATarget
XM_014775060.1
ncRNA:21   CGAAUUGAGUUAGGAUGUUUU   1
  |=|||||||||*|||||||||
targets:1669   GUUUAACUCAACCCUACAAAA   1689

1.5 PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X2, mRNA uncharacterized LOC102659952(LOC102659952) coding protein psRNATarget
XM_014770446.1
ncRNA:21   CGAAUUGAGUUAGGAUGUUUU   1
  *||||||||*|||||||||||
targets:1133   ACUUAACUCCAUCCUACAAAA   1153

1.5 PREDICTED: Glycine max AT-hook motif nuclear-localized protein 16-like (LOC100788581), mRNA AT-hook motif nuclear-localized protein 16-like(LOC100788581) coding protein psRNATarget
XM_006595692.2
ncRNA:21   CGAAUUGAGUUAGGAUGUUUU   1
  *||||||||*|||||||||||
targets:1213   ACUUAACUCCAUCCUACAAAA   1233

1.5 PREDICTED: Glycine max AT-hook motif nuclear-localized protein 16-like (LOC100804941), mRNA AT-hook motif nuclear-localized protein 16-like(LOC100804941) coding protein psRNATarget
XM_006590969.2
ncRNA:21   CGAAUUGAGUUAGGAUGUUUU   1
  |=*||||||||*|||||||||
targets:2238   GUCUAACUCAACCCUACAAAA   2258

2.5 PREDICTED: Glycine max uncharacterized LOC100797428 (LOC100797428), transcript variant X3, mRNA uncharacterized LOC100797428(LOC100797428) coding protein psRNATarget
BT094198.1
ncRNA:21   CGAAUUGAGUUAGGAUGUUUU   1
  ||*|||||||||||*||||||
targets:258   GCCUAACUCAAUCCCACAAAA   278

2.5 Soybean clone JCVI-FLGm-18G8 unknown mRNA NA coding protein psRNATarget
XM_003555145.3
ncRNA:21   CGAAUUGAGUUAGGAUGUUUU   1
  ||*|||||||||||*||||||
targets:2538   GCCUAACUCAAUCCCACAAAA   2558

2.5 PREDICTED: Glycine max aluminum-activated malate transporter 12-like (LOC100796724), transcript variant X3, mRNA aluminum-activated malate transporter 12-like(LOC100796724) coding protein psRNATarget
XM_014762132.1
ncRNA:21   CGAAUUGAGUUAGGAUGUUUU   1
  |=*||||||||*|||||||||
targets:1504   GUCUAACUCAACCCUACAAAA   1524

2.5 PREDICTED: Glycine max SKP1-like protein 21 (LOC100775387), transcript variant X2, mRNA SKP1-like protein 21(LOC100775387) coding protein psRNATarget
XM_014769282.1
ncRNA:21   CGAAUUGAGUUAGGAUGUUUU   1
  *=|||*=|||||||||||||=
targets:89   AUUUAUUUCAAUCCUACAAAG   109

3.0 PREDICTED: Glycine max uncharacterized LOC100306342 (LOC100306342), transcript variant X1, mRNA uncharacterized LOC100306342(LOC100306342) coding protein psRNATarget
BT090395.1
ncRNA:21   CGAAUUGAGUUAGGAUGUUUU   1
  *=|||*=|||||||||||||=
targets:127   AUUUAUUUCAAUCCUACAAAG   147

3.0 Soybean clone JCVI-FLGm-4K2 unknown mRNA NA coding protein psRNATarget
NM_001250379.1
ncRNA:21   CGAAUUGAGUUAGGAUGUUUU   1
  *=|||*=|||||||||||||=
targets:127   AUUUAUUUCAAUCCUACAAAG   147

3.0 Glycine max uncharacterized LOC100306342 (LOC100306342), mRNA uncharacterized LOC100306342(LOC100306342) coding protein psRNATarget
XM_003529565.3
ncRNA:21   CGAAUUGAGUUAGGAUGUUUU   1
  *=|||*=|||||||||||||=
targets:202   AUUUAUUUCAAUCCUACAAAG   222

3.0 PREDICTED: Glycine max dual specificity protein phosphatase 1-like (LOC100806191), mRNA dual specificity protein phosphatase 1-like(LOC100806191) coding protein psRNATarget
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