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BaseInfo

ncRNA ID novel_gma_miR8383
Species Glycine max
Class miRNA
Genome position Chr17:31904515-31904621 [-]
Reference genome Glycine_max_v2.0
Source SRR1451618
Length 22
Mature sequence(if miRNA) 1 - UCCGGAAGAAGAAUUUGUGACU - 22
Stem-loop(if miRNA) -UCA    -UUA              UAU             C          A
    GCAA    UUCUUUCGGAAGAA   UUUUUUUGAAAAA UUUUUGGAAA U
    ||||    ||||||||||||||   ||||||||||||| |||||||||| C
    UGUU    AAGAAGGCCUUCUU   AAGAAGGCUUUUU AAAGGCCUUU U
UCAG    UAAG              -CC             -          C
Stem-loop sequence UCAGCAAUUAUUCUUUCGGAAGAAUAUUUUUUUUGAAAAACUUUUUGGAAAAUCUCUUUCCGGAAAUUUUUCGGAAGAACCUUCUUCCGGAAGAAGAAUUUGUGACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT098485.1
ncRNA:22   UCAGUGUUUAAGAAGAAGGCCU   1
  ***||||||||||||||||*||
targets:392   CUGCACAAAUUCUUCUUCCAGA   413

1.5 Soybean clone JCVI-FLGm-12D21 unknown mRNA NA coding protein psRNATarget
XM_006573284.2
ncRNA:22   UCAGUGUUUAAGAAGAAGGCCU   1
  **|||=*|||||||||||||||
targets:1651   CUUCAUCAAUUCUUCUUCCGGA   1672

2.0 PREDICTED: Glycine max aquaporin PIP1-2-like (LOC100781984), mRNA aquaporin PIP1-2-like(LOC100781984) coding protein psRNATarget
XM_006602964.2
ncRNA:22   UCAGUGU-UUAAGAAGAAGGCCU   1
  ***||||-=||||||||||||||
targets:1537   CAACACAUGAUUCUUCUUCCGGA   1559

3.0 PREDICTED: Glycine max disease resistance protein RPP13-like (LOC100780593), mRNA disease resistance protein RPP13-like(LOC100780593) coding protein psRNATarget