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BaseInfo

ncRNA ID novel_gma_miR8382
Species Glycine max
Class miRNA
Genome position Chr17:37231944-37232030 [-]
Reference genome Glycine_max_v2.0
Source SRR1451618
Length 21
Mature sequence(if miRNA) 67 - UAGUUGUGGAUCAAGUUGAUC - 87
Stem-loop(if miRNA) --                           UCU          A
  UAGUUGUGGAUCAAGUUGAUCCGUGAG   UUUGUGGAUC A
  |||||||||||||||||||||||||||   |||||||||| G
  AUCAGCGCCUAGUUCAACUAGGUACUU   GAAUACCUAG U
CU                           UCU          U
Stem-loop sequence UAGUUGUGGAUCAAGUUGAUCCGUGAGUCUUUUGUGGAUCAAGUUGAUCCAUAAGUCUUUCAUGGAUCAACUUGAUCCGCGACUAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006583189.2
ncRNA:21   CUAGUUGAACUAGGUGUUGAU   1
  |=*||||||||||||||||*|
targets:851   GGCCAACUUGAUCCACAACAA   871

2.5 PREDICTED: Glycine max probable indole-3-acetic acid-amido synthetase GH3.5 (LOC100813492), transcript variant X4, mRNA probable indole-3-acetic acid-amido synthetase GH3.5(LOC100813492) coding protein psRNATarget
XM_006583187.2
ncRNA:21   CUAGUUGAACUAGGUGUUGAU   1
  |=*||||||||||||||||*|
targets:971   GGCCAACUUGAUCCACAACAA   991

2.5 PREDICTED: Glycine max probable indole-3-acetic acid-amido synthetase GH3.5 (LOC100813492), transcript variant X2, mRNA probable indole-3-acetic acid-amido synthetase GH3.5(LOC100813492) coding protein psRNATarget
XM_003528754.3
ncRNA:21   CUAGUUGAACUAGGUGUUGAU   1
  |=*||||||||||||||||*|
targets:989   GGCCAACUUGAUCCACAACAA   1009

2.5 PREDICTED: Glycine max probable indole-3-acetic acid-amido synthetase GH3.5 (LOC100813492), transcript variant X1, mRNA probable indole-3-acetic acid-amido synthetase GH3.5(LOC100813492) coding protein psRNATarget
XM_006583188.2
ncRNA:21   CUAGUUGAACUAGGUGUUGAU   1
  |=*||||||||||||||||*|
targets:1292   GGCCAACUUGAUCCACAACAA   1312

2.5 PREDICTED: Glycine max probable indole-3-acetic acid-amido synthetase GH3.5 (LOC100813492), transcript variant X3, mRNA probable indole-3-acetic acid-amido synthetase GH3.5(LOC100813492) coding protein psRNATarget