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BaseInfo

ncRNA ID novel_gma_miR8370
Species Glycine max
Class miRNA
Genome position Chr16:24253242-24253394 [+]
Reference genome Glycine_max_v2.0
Source SRR1451618
Length 21
Mature sequence(if miRNA) 1 - AAUUGACUUCUCUGUUGUCCU - 21
Stem-loop(if miRNA) --AA   A                  CU   CUA    G         ACU  GUUUGUGUUAAUAUUUAAUUUUGU
    UUG CUUCUCUGUUGUCCUUUU  CAG   UCCC GUGUUGUCC   UA                        G
    ||| ||||||||||||||||||  |||   |||| |||||||||   ||
    GAC GAAGAGACGACGGGGAAA  GUC   AGGG CACGACGGG   AC                        A
CCUG   C                  AG   AAC    G         -GA  UUUUAGUGUGUCAAAAUUUAACUU
Stem-loop sequence AAUUGACUUCUCUGUUGUCCUUUUCUCAGCUAUCCCGGUGUUGUCCACUUAGUUUGUGUUAAUAUUUAAUUUUGUGAUUCAAUUUAAAACUGUGUGAUUUUCAAGGGGCAGCACGGGGACAACUGGAAAAGGGGCAGCAGAGAAGCCAGGUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006598182.2
ncRNA:21   UCCUGUUGUCUCUUCAGUUAA   1
  |||||||=|*|||||||||||
targets:22   AGGACAAUAAAGAAGUCAAUU   42

2.5 PREDICTED: Glycine max uncharacterized LOC102660381 (LOC102660381), mRNA uncharacterized LOC102660381(LOC102660381) coding protein psRNATarget
XM_014776180.1
ncRNA:21   UCCUGUUGUCUCUUCAGUUAA   1
  **||||=||||||||||||*|
targets:312   UAGACAGCAGAGAAGUCAAAU   332

2.5 PREDICTED: Glycine max probable dimethyladenosine transferase-like (LOC100819707), transcript variant X4, mRNA probable dimethyladenosine transferase-like(LOC100819707) coding protein psRNATarget
XM_014776179.1
ncRNA:21   UCCUGUUGUCUCUUCAGUUAA   1
  **||||=||||||||||||*|
targets:312   UAGACAGCAGAGAAGUCAAAU   332

2.5 PREDICTED: Glycine max probable dimethyladenosine transferase-like (LOC100819707), transcript variant X3, mRNA probable dimethyladenosine transferase-like(LOC100819707) coding protein psRNATarget
XM_006582346.2
ncRNA:21   UCCUGUUGUCUCUUCAGUUAA   1
  |**=||=||||||||||||||
targets:152   ACAGCAGCAGAGAAGUCAAUU   172

3.0 PREDICTED: Glycine max 8-amino-7-oxononanoate synthase-like (LOC100776585), transcript variant X2, mRNA 8-amino-7-oxononanoate synthase-like(LOC100776585) coding protein psRNATarget
XM_003527499.3
ncRNA:21   UCCUGUUGUCUCUUCAGUUAA   1
  |**=||=||||||||||||||
targets:150   ACAGCAGCAGAGAAGUCAAUU   170

3.0 PREDICTED: Glycine max 8-amino-7-oxononanoate synthase-like (LOC100776585), transcript variant X1, mRNA 8-amino-7-oxononanoate synthase-like(LOC100776585) coding protein psRNATarget
XM_006582347.2
ncRNA:21   UCCUGUUGUCUCUUCAGUUAA   1
  |**=||=||||||||||||||
targets:153   ACAGCAGCAGAGAAGUCAAUU   173

3.0 PREDICTED: Glycine max 8-amino-7-oxononanoate synthase-like (LOC100776585), transcript variant X3, mRNA 8-amino-7-oxononanoate synthase-like(LOC100776585) coding protein psRNATarget
XM_006593644.2
ncRNA:21   UCCUGUUGUCUCUUCAGUUAA   1
  **|*==|||||||||||||||
targets:486   UUGUUGACAGAGAAGUCAAUU   506

3.0 PREDICTED: Glycine max probable sodium-coupled neutral amino acid transporter 6 (LOC100799425), transcript variant X1, mRNA probable sodium-coupled neutral amino acid transporter 6(LOC100799425) coding protein psRNATarget
AK245082.1
ncRNA:21   UCCUGUUGUCUCUUCAGUUAA   1
  **|*==|||||||||||||||
targets:641   UUGUUGACAGAGAAGUCAAUU   661

3.0 Glycine max cDNA, clone: GMFL01-20-I09 NA coding protein psRNATarget
XM_003543975.3
ncRNA:21   UCCUGUUGUCUCUUCAGUUAA   1
  **|*==|||||||||||||||
targets:596   UUGUUGACAGAGAAGUCAAUU   616

3.0 PREDICTED: Glycine max probable sodium-coupled neutral amino acid transporter 6 (LOC100799425), transcript variant X2, mRNA probable sodium-coupled neutral amino acid transporter 6(LOC100799425) coding protein psRNATarget
XM_003552576.2
ncRNA:21   UCCUGUUGUCUCUUCAGUUAA   1
  **|*==|||||||||||||||
targets:650   UUGUUGACAGAGAAGUCAAUU   670

3.0 PREDICTED: Glycine max probable sodium-coupled neutral amino acid transporter 6 (LOC100796345), mRNA probable sodium-coupled neutral amino acid transporter 6(LOC100796345) coding protein psRNATarget
AK245524.1
ncRNA:21   UCCUGUUGUCUCUUCAGUUAA   1
  **|*==|||||||||||||||
targets:647   UUGUUGACAGAGAAGUCAAUU   667

3.0 Glycine max cDNA, clone: GMFL01-33-B09 NA coding protein psRNATarget
AK244140.1
ncRNA:21   UCCUGUUGUCUCUUCAGUUAA   1
  **|*==|||||||||||||||
targets:641   UUGUUGACAGAGAAGUCAAUU   661

3.0 Glycine max cDNA, clone: GMFL01-02-D06 NA coding protein psRNATarget
XM_003531846.3
ncRNA:21   UCCUGUUGUCUCUUCAGUUAA   1
  **|*==|||||||||||||||
targets:654   UUGUUGACAGAGAAGUCAAUU   674

3.0 PREDICTED: Glycine max probable sodium-coupled neutral amino acid transporter 6 (LOC100795222), mRNA probable sodium-coupled neutral amino acid transporter 6(LOC100795222) coding protein psRNATarget
XM_003554974.3
ncRNA:21   UCCUGUUGUCUCUUCAGUUAA   1
  **|*==|||||||||||||||
targets:795   UUGUUGACAGAGAAGUCAAUU   815

3.0 PREDICTED: Glycine max sodium-coupled neutral amino acid transporter 1-like (LOC100785277), mRNA sodium-coupled neutral amino acid transporter 1-like(LOC100785277) coding protein psRNATarget
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