Search result

BaseInfo

ncRNA ID	novel_gma_miR8335
Species	Glycine max
Class	miRNA
Genome position	Chr13:6829437-6829503 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451618
Length	20
Mature sequence(if miRNA)	48 - AUUUUCUGUAAUUCUCUCAA - 67
Stem-loop(if miRNA)	--    U      A     ----------      CUCU   GAGA GGGUUA UAGAG          UGGGUC    C   |||| |||||| |||||          ||||||    U   CUCU CUUAAU GUCUU          ACCCAG    C AA    -      -     UUACUAACAA      UCAC
Stem-loop sequence	GAGAUGGGUUAAUAGAGUGGGUCCUCUCUCCACUGACCCAAACAAUCAUUUUCUGUAAUUCUCUCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006600645.2	ncRNA:20   AACUCUCUUAAUGUCUUUUA   1   |||=**|||||||||||||| targets:1410   UUGGUUGAAUUACAGAAAAU   1429 Target Full Sequence	3.0	PREDICTED: Glycine max homeobox protein knotted-1-like LET12 (LOC100781997), transcript variant X3, mRNA	homeobox protein knotted-1-like LET12(LOC100781997)	coding protein	psRNATarget
XM_003549656.3	ncRNA:20   AACUCUCUUAAUGUCUUUUA   1   |||=**|||||||||||||| targets:1414   UUGGUUGAAUUACAGAAAAU   1433 Target Full Sequence	3.0	PREDICTED: Glycine max homeobox protein knotted-1-like LET12 (LOC100781997), transcript variant X2, mRNA	homeobox protein knotted-1-like LET12(LOC100781997)	coding protein	psRNATarget
XM_006600644.2	ncRNA:20   AACUCUCUUAAUGUCUUUUA   1   |||=**|||||||||||||| targets:1418   UUGGUUGAAUUACAGAAAAU   1437 Target Full Sequence	3.0	PREDICTED: Glycine max homeobox protein knotted-1-like LET12 (LOC100781997), transcript variant X1, mRNA	homeobox protein knotted-1-like LET12(LOC100781997)	coding protein	psRNATarget
XM_006594169.2	ncRNA:20   AACUCUCUUAAUGUCUUUUA   1   |||=**|||||||||||||| targets:1493   UUGGUUGAAUUACAGAAAAU   1512 Target Full Sequence	3.0	PREDICTED: Glycine max homeobox protein knotted-1-like LET12 (LOC100803673), transcript variant X3, mRNA	homeobox protein knotted-1-like LET12(LOC100803673)	coding protein	psRNATarget
XM_003542577.3	ncRNA:20   AACUCUCUUAAUGUCUUUUA   1   |||=**|||||||||||||| targets:1497   UUGGUUGAAUUACAGAAAAU   1516 Target Full Sequence	3.0	PREDICTED: Glycine max homeobox protein knotted-1-like LET12 (LOC100803673), transcript variant X2, mRNA	homeobox protein knotted-1-like LET12(LOC100803673)	coding protein	psRNATarget
XM_006594168.2	ncRNA:20   AACUCUCUUAAUGUCUUUUA   1   |||=**|||||||||||||| targets:1500   UUGGUUGAAUUACAGAAAAU   1519 Target Full Sequence	3.0	PREDICTED: Glycine max homeobox protein knotted-1-like LET12 (LOC100803673), transcript variant X1, mRNA	homeobox protein knotted-1-like LET12(LOC100803673)	coding protein	psRNATarget