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BaseInfo

ncRNA ID novel_gma_miR8333
Species Glycine max
Class miRNA
Genome position Chr13:5226845-5226901 [+]
Reference genome Glycine_max_v2.0
Source SRR1451618
Length 21
Mature sequence(if miRNA) 37 - AUGAACUUCAUCCGUAUGAGU - 57
Stem-loop(if miRNA) --      AU                  
  UCAUAC  AUGAAGUUCAUUCGUAUGA
  ||||||  ||||||||||||||||||U
  AGUAUG  UACUUCAAGUAAGCAUACU
UG      CC                  
Stem-loop sequence UCAUACAUAUGAAGUUCAUUCGUAUGAUUCAUACGAAUGAACUUCAUCCGUAUGAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006573065.2
ncRNA:21   UGAGUAUGCCUACUUCAAGUA   1
  |||||||||||||||||||||
targets:3925   ACUCAUACGGAUGAAGUUCAU   3945

0.0 PREDICTED: Glycine max uncharacterized LOC102666756 (LOC102666756), transcript variant X2, mRNA uncharacterized LOC102666756(LOC102666756) coding protein psRNATarget
XM_006573065.2
ncRNA:21   UGAGUAUGCCUACUUCAAGUA   1
  |=|||||||||||||||||||
targets:3863   AUUCAUACGGAUGAAGUUCAU   3883

0.0 PREDICTED: Glycine max uncharacterized LOC102666756 (LOC102666756), transcript variant X2, mRNA uncharacterized LOC102666756(LOC102666756) coding protein psRNATarget
XM_014773439.1
ncRNA:21   UGAGUAUGCCUACUUCAAGUA   1
  |||||||||||||||||||||
targets:3925   ACUCAUACGGAUGAAGUUCAU   3945

0.0 PREDICTED: Glycine max uncharacterized LOC102666756 (LOC102666756), transcript variant X3, mRNA uncharacterized LOC102666756(LOC102666756) coding protein psRNATarget
XM_014773439.1
ncRNA:21   UGAGUAUGCCUACUUCAAGUA   1
  |=|||||||||||||||||||
targets:3863   AUUCAUACGGAUGAAGUUCAU   3883

0.0 PREDICTED: Glycine max uncharacterized LOC102666756 (LOC102666756), transcript variant X3, mRNA uncharacterized LOC102666756(LOC102666756) coding protein psRNATarget
XM_014773434.1
ncRNA:21   UGAGUAUGCCUACUUCAAGUA   1
  |||||||||||||||||||||
targets:3925   ACUCAUACGGAUGAAGUUCAU   3945

0.0 PREDICTED: Glycine max uncharacterized LOC102666756 (LOC102666756), transcript variant X1, mRNA uncharacterized LOC102666756(LOC102666756) coding protein psRNATarget
XM_014773434.1
ncRNA:21   UGAGUAUGCCUACUUCAAGUA   1
  |=|||||||||||||||||||
targets:3863   AUUCAUACGGAUGAAGUUCAU   3883

0.0 PREDICTED: Glycine max uncharacterized LOC102666756 (LOC102666756), transcript variant X1, mRNA uncharacterized LOC102666756(LOC102666756) coding protein psRNATarget
XM_003520377.2
ncRNA:21   UGAGUAUGCCUACUUCAAGUA   1
  ==|||||||||||||||||||
targets:1906   GUUCAUACGGAUGAAGUUCAU   1926

0.0 PREDICTED: Glycine max phospholipase A(1) DAD1, chloroplastic-like (LOC100788424), mRNA phospholipase A(1) DAD1, chloroplastic-like(LOC100788424) coding protein psRNATarget
XM_006583693.2
ncRNA:21   UGAGUAUGCCUACUUCAAGUA   1
  ==|||||||||||||||||||
targets:451   GUUCAUACGGAUGAAGUUCAU   471

0.0 PREDICTED: Glycine max uncharacterized LOC102663037 (LOC102663037), mRNA uncharacterized LOC102663037(LOC102663037) coding protein psRNATarget
XM_006576961.2
ncRNA:21   UGAGUAUGCCUACUUCAAGUA   1
  |=|||||=||||||||*||||
targets:3844   AUUCAUAUGGAUGAAGCUCAU   3864

2.5 PREDICTED: Glycine max ethylene-insensitive protein 2-like (LOC100813034), transcript variant X2, mRNA ethylene-insensitive protein 2-like(LOC100813034) coding protein psRNATarget
XM_006576960.2
ncRNA:21   UGAGUAUGCCUACUUCAAGUA   1
  |=|||||=||||||||*||||
targets:3964   AUUCAUAUGGAUGAAGCUCAU   3984

2.5 PREDICTED: Glycine max ethylene-insensitive protein 2-like (LOC100813034), transcript variant X1, mRNA ethylene-insensitive protein 2-like(LOC100813034) coding protein psRNATarget
XM_006593444.2
ncRNA:21   UGAGUAUGCCUACUUCAAGUA   1
  *=|=|||||||||||*|||||
targets:3700   UUUUAUACGGAUGAACUUCAU   3720

2.5 PREDICTED: Glycine max calcium-transporting ATPase 8, plasma membrane-type-like (LOC100813841), transcript variant X11, mRNA calcium-transporting ATPase 8, plasma membrane-type-like(LOC100813841) coding protein psRNATarget
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