Search result

BaseInfo

ncRNA ID novel_gma_miR8298
Species Glycine max
Class miRNA
Genome position Chr8:719118-719243 [+]
Reference genome Glycine_max_v2.0
Source SRR1451618
Length 21
Mature sequence(if miRNA) 106 - UUCCUCGGCUAUUUGCAUGCC - 126
Stem-loop(if miRNA) --     CU       A    U A      U     UU   UU   U   A      UUAAUUAA
  CAUGU  GGUAGCC AGGA G CUUGCC AGUUA  CCA  UUA GGG CUUUAU        U
  |||||  ||||||| |||| | |||||| |||||  |||  ||| ||| ||||||
  GUACG  UUAUCGG UCCU C GAACGG UUAAU  GGU  GAU CCC GAGGUA        U
CC     -U       C    U -      -     -U   UU   U   A      UACUCUGU
Stem-loop sequence CAUGUCUGGUAGCCAAGGAUGACUUGCCUAGUUAUUCCAUUUUAUGGGACUUUAUUUAAUUAAUUUGUCUCAUAUGGAGACCCUUAGUUUGGUUAAUUGGCAAGCUUCCUCGGCUAUUUGCAUGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006577272.2
ncRNA:21   CCGUACGUUUAUCGGCUCCUU   1
  ***|*|||||||||||||||=
targets:1087   AUGAAGCAAAUAGCCGAGGAG   1107

3.0 PREDICTED: Glycine max uncharacterized protein At5g41620-like (LOC100812498), mRNA uncharacterized protein At5g41620-like(LOC100812498) coding protein psRNATarget