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BaseInfo

ncRNA ID novel_gma_miR8292
Species Glycine max
Class miRNA
Genome position Chr11:646843-647043 [-]
Reference genome Glycine_max_v2.0
Source SRR1451618
Length 24
Mature sequence(if miRNA) 1 - AUUAAAAUGUAAACUAUAGGACUU - 24
Stem-loop(if miRNA) --A    U                      C    - -   -     U       G           AC    A   -  ---CU      -------  -       U
   UCUU AUAGUUUACAUUUUAAUUCUCU UUAG C CUU AGUUU AAAAGUG UCUUUUUAGUU  UAUA UUU CA     AUUCUC       CC UAUAGUU U
   |||| |||||||||||||||||||||| |||| | ||| ||||| ||||||| |||||||||||  |||| ||| ||     ||||||       || |||||||
   AGGA UAUCAAAUGUAAAAUUAAGAGA AAUC G GAA UCAAA UUUUUAU AGAAAAAUCAG  AUAU AAA GU     UAAGAG       GG AUAUUAA C
UUC    -                      A    A A   A     -       A           GU    C   U  AAAAU      AAGAUUA  U       A
Stem-loop sequence AUCUUUAUAGUUUACAUUUUAAUUCUCUCUUAGCCUUAGUUUUAAAAGUGGUCUUUUUAGUUACUAUAAUUUCACUAUUCUCCCUAUAGUUUUCAAAUUAUAUGGAUUAGAAGAGAAUUAAAAUGUAAACUAUAUGGACUAAAAAGAAUAUUUUUAAACUAAAGAGACUAAAAGAGAAUUAAAAUGUAAACUAUAGGACUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006577048.2
ncRNA:24   UUCAGG-AUAUCAAAUGUAAAAUUA   1
  *|||||-||||||||||||||||||
targets:1926   UAGUCCCUAUAGUUUACAUUUUAAU   1950

2.0 PREDICTED: Glycine max uncharacterized LOC100819268 (LOC100819268), transcript variant X1, mRNA uncharacterized LOC100819268(LOC100819268) coding protein psRNATarget
XM_014773932.1
ncRNA:24   UUCAGG-AUAUCAAAUGUAAAAUUA   1
  *|||||-||||||||||||||||||
targets:2036   UAGUCCCUAUAGUUUACAUUUUAAU   2060

2.0 PREDICTED: Glycine max uncharacterized LOC100819268 (LOC100819268), transcript variant X2, mRNA uncharacterized LOC100819268(LOC100819268) coding protein psRNATarget