Search result

BaseInfo

ncRNA ID novel_gma_miR8290
Species Glycine max
Class miRNA
Genome position Chr7:27428528-27428605 [-]
Reference genome Glycine_max_v2.0
Source SRR1451618
Length 24
Mature sequence(if miRNA) 1 - CUUGGAAAAGAUCUAACAGACUCA - 24
Stem-loop(if miRNA) --         ---  A  A    U   A   GA      GA
  AGUUUGUUA   CU UU CUAA GCU UUA  AAUGAA  A
  |||||||||   || || |||| ||| |||  ||||||  A
  UCAGACAAU   GA AA GGUU CGA AAU  UUACUU  A
AC         CUA  A  -    -   -   -A      GA
Stem-loop sequence AGUUUGUUACUAUUACUAAUGCUAUUAGAAAUGAAGAAAAAGUUCAUUAUAAAGCUUGGAAAAGAUCUAACAGACUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014764284.1
ncRNA:24   ACUCAGACAAUCUAGAAAAGGUUC   1
  *||-||*||||||||||||=||||
targets:139   AGA-UCCGUUAGAUCUUUUUCAAG   161

2.5 PREDICTED: Glycine max DNA topoisomerase 3-beta (LOC100791807), transcript variant X2, mRNA DNA topoisomerase 3-beta(LOC100791807) coding protein psRNATarget
XM_003538488.3
ncRNA:24   ACUCAGACAAUCUAGAAAAGGUUC   1
  *||-||*||||||||||||=||||
targets:344   AGA-UCCGUUAGAUCUUUUUCAAG   366

2.5 PREDICTED: Glycine max DNA topoisomerase 3-beta (LOC100791807), transcript variant X1, mRNA DNA topoisomerase 3-beta(LOC100791807) coding protein psRNATarget