ncRNA ID | novel_gma_miR8278 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr5:9328541-9328734 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451618 |
Length | 22 |
Mature sequence(if miRNA) | 1 - AUGAUGAUUUAUCUUGGUACUU - 22 |
Stem-loop(if miRNA) |
--                                          C        C                                 UCAUCAUCAU   GUACCAAGAUAAAUCAUCAUAAUUGAAAAGAUAAAUAAGAAA UGUUAAUC UAAUCUAUCUAAGUUCUUUCUUUUCCUUCUUGA          U   |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||   CAUGGUUCUAUUUAGUAGUAUUAACUUUUCUAUUUAUUUUUU ACAAUUAG AUUAGAUAGAUUCAAGAAGGAGAAGGAAGAACU          A UU                                          A        A                                 CACACAAAAA |
Stem-loop sequence | GUACCAAGAUAAAUCAUCAUAAUUGAAAAGAUAAAUAAGAAACUGUUAAUCCUAAUCUAUCUAAGUUCUUUCUUUUCCUUCUUGAUCAUCAUCAUUAAAAAACACACUCAAGAAGGAAGAGGAAGAACUUAGAUAGAUUAAGAUUAACAAUUUUUUAUUUAUCUUUUCAAUUAUGAUGAUUUAUCUUGGUACUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_001255606.1 |
|
2.5 | Glycine max PHD finger protein ALFIN-LIKE 1-like (LOC100779170), mRNA | PHD finger protein ALFIN-LIKE 1-like(LOC100779170) | coding protein | psRNATarget | |||||||||
BT095842.1 |
|
2.5 | Soybean clone JCVI-FLGm-19P18 unknown mRNA | NA | coding protein | psRNATarget |