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BaseInfo

ncRNA ID novel_gma_miR8278
Species Glycine max
Class miRNA
Genome position Chr5:9328541-9328734 [-]
Reference genome Glycine_max_v2.0
Source SRR1451618
Length 22
Mature sequence(if miRNA) 1 - AUGAUGAUUUAUCUUGGUACUU - 22
Stem-loop(if miRNA) --                                          C        C                                 UCAUCAUCAU
  GUACCAAGAUAAAUCAUCAUAAUUGAAAAGAUAAAUAAGAAA UGUUAAUC UAAUCUAUCUAAGUUCUUUCUUUUCCUUCUUGA          U
  |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
  CAUGGUUCUAUUUAGUAGUAUUAACUUUUCUAUUUAUUUUUU ACAAUUAG AUUAGAUAGAUUCAAGAAGGAGAAGGAAGAACU          A
UU                                          A        A                                 CACACAAAAA
Stem-loop sequence GUACCAAGAUAAAUCAUCAUAAUUGAAAAGAUAAAUAAGAAACUGUUAAUCCUAAUCUAUCUAAGUUCUUUCUUUUCCUUCUUGAUCAUCAUCAUUAAAAAACACACUCAAGAAGGAAGAGGAAGAACUUAGAUAGAUUAAGAUUAACAAUUUUUUAUUUAUCUUUUCAAUUAUGAUGAUUUAUCUUGGUACUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001255606.1
ncRNA:22   UUCAUGGUUCUAUUUAGUAGUA   1
  ***|||||||||*||||||||*
targets:994   UUCUACCAAGAUUAAUCAUCAG   1015

2.5 Glycine max PHD finger protein ALFIN-LIKE 1-like (LOC100779170), mRNA PHD finger protein ALFIN-LIKE 1-like(LOC100779170) coding protein psRNATarget
BT095842.1
ncRNA:22   UUCAUGGUUCUAUUUAGUAGUA   1
  ***|||||||||*||||||||*
targets:994   UUCUACCAAGAUUAAUCAUCAG   1015

2.5 Soybean clone JCVI-FLGm-19P18 unknown mRNA NA coding protein psRNATarget