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BaseInfo

ncRNA ID novel_gma_miR8276
Species Glycine max
Class miRNA
Genome position Chr5:37960111-37960173 [-]
Reference genome Glycine_max_v2.0
Source SRR1451618
Length 23
Mature sequence(if miRNA) 41 - UUUGCAUAUGUAAGGGUAAGACU - 63
Stem-loop(if miRNA) --  UG A    UA      A ACU  AUACA
  UU  C UAUG  AGGGUA G   GA     A
  ||  | ||||  |||||| |   ||
  GA  G AUAC  UUCCAU C   CU     U
AG  GU -    GC      A CCC  CCCAA
Stem-loop sequence UUUGCAUAUGUAAGGGUAAGACUGAAUACAAUAACCCUCCCCCAUACCUUCGCAUAGUGAGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT091184.1
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||*||||||||||||||||||||
targets:411   AGCCUUACCCUUACAUAUGCAAA   433

0.0 Soybean clone JCVI-FLGm-7I10 unknown mRNA NA coding protein psRNATarget
XM_003544207.3
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  |**=|||=|||||||||||||||
targets:902   AAAUUUAUCCUUACAUAUGCAAA   924

1.0 PREDICTED: Glycine max probable aquaporin NIP-type (LOC100791338), mRNA probable aquaporin NIP-type(LOC100791338) coding protein psRNATarget
XM_014777539.1
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||||||||||||=||||||||||
targets:754   AGUCUUACCCUUGCAUAUGCAAA   776

1.5 PREDICTED: Glycine max somatic embryogenesis receptor kinase 1 (LOC100777352), mRNA somatic embryogenesis receptor kinase 1(LOC100777352) coding protein psRNATarget
XM_006595635.2
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||||||||||||=||||||||||
targets:2461   AGUCUUACCCUUGCAUAUGCAAA   2483

1.5 PREDICTED: Glycine max zinc finger CCCH domain-containing protein 18-like (LOC100818984), transcript variant X2, mRNA zinc finger CCCH domain-containing protein 18-like(LOC100818984) coding protein psRNATarget
XM_014766981.1
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||||||||||||=||||||||||
targets:2470   AGUCUUACCCUUGCAUAUGCAAA   2492

1.5 PREDICTED: Glycine max zinc finger CCCH domain-containing protein 18-like (LOC100818984), transcript variant X3, mRNA zinc finger CCCH domain-containing protein 18-like(LOC100818984) coding protein psRNATarget
XM_003544640.3
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||||||||||||=||||||||||
targets:2487   AGUCUUACCCUUGCAUAUGCAAA   2509

1.5 PREDICTED: Glycine max zinc finger CCCH domain-containing protein 18-like (LOC100818984), transcript variant X1, mRNA zinc finger CCCH domain-containing protein 18-like(LOC100818984) coding protein psRNATarget
XM_014770744.1
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||||||||||||=||||||||||
targets:2845   AGUCUUACCCUUGCAUAUGCAAA   2867

1.5 PREDICTED: Glycine max zinc finger CCCH domain-containing protein 18-like (LOC100810174), transcript variant X1, mRNA zinc finger CCCH domain-containing protein 18-like(LOC100810174) coding protein psRNATarget
XM_014770746.1
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||||||||||||=||||||||||
targets:2923   AGUCUUACCCUUGCAUAUGCAAA   2945

1.5 PREDICTED: Glycine max zinc finger CCCH domain-containing protein 18-like (LOC100810174), transcript variant X2, mRNA zinc finger CCCH domain-containing protein 18-like(LOC100810174) coding protein psRNATarget
XM_006585879.2
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  |||||||||||||||*|||||||
targets:1834   AGUCUUACCCUUACACAUGCAAA   1856

1.5 PREDICTED: Glycine max protein trichome birefringence-like 2 (LOC100798751), mRNA protein trichome birefringence-like 2(LOC100798751) coding protein psRNATarget
XM_003544873.3
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||*|||||||||=||||||||||
targets:584   AGCCUUACCCUUGCAUAUGCAAA   606

1.5 PREDICTED: Glycine max biogenesis of lysosome-related organelles complex 1 subunit 1-like (LOC100811869), mRNA biogenesis of lysosome-related organelles complex 1 subunit 1-like(LOC100811869) coding protein psRNATarget
XM_014767489.1
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||*|||||||||=||||||||||
targets:775   AGCCUUACCCUUGCAUAUGCAAA   797

1.5 PREDICTED: Glycine max uncharacterized LOC100814053 (LOC100814053), transcript variant X2, mRNA uncharacterized LOC100814053(LOC100814053) coding protein psRNATarget
XM_014767488.1
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||*|||||||||=||||||||||
targets:845   AGCCUUACCCUUGCAUAUGCAAA   867

1.5 PREDICTED: Glycine max uncharacterized LOC100814053 (LOC100814053), transcript variant X1, mRNA uncharacterized LOC100814053(LOC100814053) coding protein psRNATarget
BT094615.1
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||*|||||||||=||||||||||
targets:1310   AGCCUUACCCUUGCAUAUGCAAA   1332

1.5 Soybean clone JCVI-FLGm-18N8 unknown mRNA NA coding protein psRNATarget
NM_001255502.1
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||*|||||||||=||||||||||
targets:1310   AGCCUUACCCUUGCAUAUGCAAA   1332

1.5 Glycine max DNA repair protein rhp7-like (LOC100797833), mRNA DNA repair protein rhp7-like(LOC100797833) coding protein psRNATarget
XM_006585621.2
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||*|||||||||=||||||||||
targets:1410   AGCCUUACCCUUGCAUAUGCAAA   1432

1.5 PREDICTED: Glycine max uncharacterized LOC102661161 (LOC102661161), transcript variant X1, mRNA uncharacterized LOC102661161(LOC102661161) coding protein psRNATarget
XM_014779184.1
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||*|||||||||=||||||||||
targets:1507   AGCCUUACCCUUGCAUAUGCAAA   1529

1.5 PREDICTED: Glycine max uncharacterized LOC102661161 (LOC102661161), transcript variant X2, mRNA uncharacterized LOC102661161(LOC102661161) coding protein psRNATarget
XM_014768278.1
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||*|||||||||=||||||||||
targets:238   AGCCUUACCCUUGCAUAUGCAAA   260

1.5 PREDICTED: Glycine max putative serine/threonine-protein kinase (LOC100800503), transcript variant X3, mRNA putative serine/threonine-protein kinase(LOC100800503) coding protein psRNATarget
XM_014768277.1
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||*|||||||||=||||||||||
targets:238   AGCCUUACCCUUGCAUAUGCAAA   260

1.5 PREDICTED: Glycine max putative serine/threonine-protein kinase (LOC100800503), transcript variant X2, mRNA putative serine/threonine-protein kinase(LOC100800503) coding protein psRNATarget
XM_014773854.1
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||*|||||||||=||||||||||
targets:773   AGCCUUACCCUUGCAUAUGCAAA   795

1.5 PREDICTED: Glycine max phosphatidate phosphatase PAH1-like (LOC102662325), transcript variant X2, mRNA phosphatidate phosphatase PAH1-like(LOC102662325) coding protein psRNATarget
XM_003542357.3
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||*|||||||||=||||||||||
targets:1963   AGCCUUACCCUUGCAUAUGCAAA   1985

1.5 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100777468), mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100777468) coding protein psRNATarget
XM_014776198.1
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||*|||||||||=||||||||||
targets:1812   AGCCUUACCCUUGCAUAUGCAAA   1834

1.5 PREDICTED: Glycine max E3 ubiquitin-protein ligase KEG-like (LOC100789574), transcript variant X2, mRNA E3 ubiquitin-protein ligase KEG-like(LOC100789574) coding protein psRNATarget
XM_014766122.1
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||*|||||||||=||||||||||
targets:2104   AGCCUUACCCUUGCAUAUGCAAA   2126

1.5 PREDICTED: Glycine max uncharacterized LOC100787520 (LOC100787520), transcript variant X1, mRNA uncharacterized LOC100787520(LOC100787520) coding protein psRNATarget
XM_006576929.2
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||*|||||||||=||||||||||
targets:1239   AGCCUUACCCUUGCAUAUGCAAA   1261

1.5 PREDICTED: Glycine max phosphatidate phosphatase PAH1-like (LOC102662325), transcript variant X1, mRNA phosphatidate phosphatase PAH1-like(LOC102662325) coding protein psRNATarget
XM_006581288.2
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||*|||||||||=||||||||||
targets:2190   AGCCUUACCCUUGCAUAUGCAAA   2212

1.5 PREDICTED: Glycine max E3 ubiquitin-protein ligase KEG-like (LOC100789574), transcript variant X1, mRNA E3 ubiquitin-protein ligase KEG-like(LOC100789574) coding protein psRNATarget
XM_006597603.2
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||*|||||||||=||||||||||
targets:2192   AGCCUUACCCUUGCAUAUGCAAA   2214

1.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g51965, mitochondrial (LOC100795211), mRNA pentatricopeptide repeat-containing protein At1g51965, mitochondrial(LOC100795211) coding protein psRNATarget
AK245921.1
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||*|||||||||=||||||||||
targets:679   AGCCUUACCCUUGCAUAUGCAAA   701

1.5 Glycine max cDNA, clone: GMFL01-46-C24 NA coding protein psRNATarget
AK245921.1
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||*|||||||||=||||||||||
targets:850   AGCCUUACCCUUGCAUAUGCAAA   872

1.5 Glycine max cDNA, clone: GMFL01-46-C24 NA coding protein psRNATarget
XM_003528666.3
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||*|||||||||=||||||||||
targets:2056   AGCCUUACCCUUGCAUAUGCAAA   2078

1.5 PREDICTED: Glycine max glucan endo-1,3-beta-glucosidase 5-like (LOC100807420), mRNA glucan endo-1,3-beta-glucosidase 5-like(LOC100807420) coding protein psRNATarget
XM_006578815.2
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  |**|||||||||=||||||||||
targets:1579   AACCUUACCCUUGCAUAUGCAAA   1601

1.5 PREDICTED: Glycine max GTPase-activating protein GYP7-like (LOC100793557), transcript variant X2, mRNA GTPase-activating protein GYP7-like(LOC100793557) coding protein psRNATarget
BT098758.1
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  |||||||=||||=||||||||||
targets:159   AGUCUUAUCCUUGCAUAUGCAAA   181

2.5 Soybean clone JCVI-FLGm-16B6 unknown mRNA NA coding protein psRNATarget
XM_014766749.1
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||*||||=||||=||||||||||
targets:2365   AGCCUUAUCCUUGCAUAUGCAAA   2387

2.5 PREDICTED: Glycine max uncharacterized protein At1g04910-like (LOC100780054), transcript variant X2, mRNA uncharacterized protein At1g04910-like(LOC100780054) coding protein psRNATarget
XM_006598286.2
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||*||||=||||=||||||||||
targets:132   AGCCUUAUCCUUGCAUAUGCAAA   154

2.5 PREDICTED: Glycine max putative disease resistance protein RGA3 (LOC100785160), transcript variant X1, mRNA putative disease resistance protein RGA3(LOC100785160) coding protein psRNATarget
XM_014771466.1
ncRNA:23   UCAGAAUGGGAAUGUAUACGUUU   1
  ||*|||=||||||||*|||||||
targets:2163   AGCCUUGCCCUUACAAAUGCAAA   2185

2.5 PREDICTED: Glycine max ubiquinone biosynthesis protein COQ4 homolog, mitochondrial (LOC100815878), partial mRNA ubiquinone biosynthesis protein COQ4 homolog, mitochondrial(LOC100815878) coding protein psRNATarget
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