Search result

BaseInfo

ncRNA ID novel_gma_miR8268
Species Glycine max
Class miRNA
Genome position Chr7:18147724-18147882 [-]
Reference genome Glycine_max_v2.0
Source SRR1451617
Length 24
Mature sequence(if miRNA) 136 - AUGAAAAUGUGUUUAGUUGGAUUU - 159
Stem-loop(if miRNA) --              A                      -AA           C           C             A
  AUGAAAAUGUGUUU GUUGGAUUUUUGAAAAUAUUUU   UGAAAAUGAAA CAGGAAACAAC AGAAAAUGAAAAU A
  |||||||||||||| ||||||||||||||||||||||   ||||||||||| ||||||||||| |||||||||||||
  UACUUUUACACAAA CAACCUAAAGACUUUUGUAAAA   ACUUUUACUUU GUCCUUUGUUG UCUUUUACUUUUG U
AC              C                      GUC           U           U             U
Stem-loop sequence AUGAAAAUGUGUUUAGUUGGAUUUUUGAAAAUAUUUUAAUGAAAAUGAAACCAGGAAACAACCAGAAAAUGAAAAUAAUUGUUUUCAUUUUCUUGUUGUUUCCUGUUUUCAUUUUCACUGAAAAUGUUUUCAGAAAUCCAACCAAACACAUUUUCAUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006591144.2
ncRNA:24   UUUAGGUUGAUUUGUGUAAAAGUA   1
  |*|||*||=||||||||||||||*
targets:104   ACAUCAAAUUAAACACAUUUUCAG   127

3.0 PREDICTED: Glycine max agamous-like MADS-box protein AGL80 (LOC100785964), mRNA agamous-like MADS-box protein AGL80(LOC100785964) coding protein psRNATarget
XM_003552873.3
ncRNA:24   UUUAGGUUGAUUUGUGUAAAAGUA   1
  |*|||*||=||||||||||||||*
targets:56   ACAUCAAAUUAAACACAUUUUCAG   79

3.0 PREDICTED: Glycine max agamous-like MADS-box protein AGL80 (LOC100797590), mRNA agamous-like MADS-box protein AGL80(LOC100797590) coding protein psRNATarget