ncRNA ID | novel_gma_miR8268 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr7:18147724-18147882 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451617 |
Length | 24 |
Mature sequence(if miRNA) | 136 - AUGAAAAUGUGUUUAGUUGGAUUU - 159 |
Stem-loop(if miRNA) |
--              A                      -AA           C           C             A   AUGAAAAUGUGUUU GUUGGAUUUUUGAAAAUAUUUU   UGAAAAUGAAA CAGGAAACAAC AGAAAAUGAAAAU A   |||||||||||||| ||||||||||||||||||||||   ||||||||||| ||||||||||| |||||||||||||   UACUUUUACACAAA CAACCUAAAGACUUUUGUAAAA   ACUUUUACUUU GUCCUUUGUUG UCUUUUACUUUUG U AC              C                      GUC           U           U             U |
Stem-loop sequence | AUGAAAAUGUGUUUAGUUGGAUUUUUGAAAAUAUUUUAAUGAAAAUGAAACCAGGAAACAACCAGAAAAUGAAAAUAAUUGUUUUCAUUUUCUUGUUGUUUCCUGUUUUCAUUUUCACUGAAAAUGUUUUCAGAAAUCCAACCAAACACAUUUUCAUCA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_006591144.2 |
|
3.0 | PREDICTED: Glycine max agamous-like MADS-box protein AGL80 (LOC100785964), mRNA | agamous-like MADS-box protein AGL80(LOC100785964) | coding protein | psRNATarget | |||||||||
XM_003552873.3 |
|
3.0 | PREDICTED: Glycine max agamous-like MADS-box protein AGL80 (LOC100797590), mRNA | agamous-like MADS-box protein AGL80(LOC100797590) | coding protein | psRNATarget |