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BaseInfo

ncRNA ID	ath-miR5638a
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr3:15336705-15337170 [-]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	73 - AUACCAAAACUCUCUCACUUU - 93
Stem-loop(if miRNA)	UCU       C    A          G            A     CU       ---G     UA    GG           A   U        C    --- U         AUAAA              A       U        ACUA     G  ----------GG    C            A      U        -CAUAA      A  -UUCA         AAAC   U  UC    UUGGAUG GAGA UGUGUUUGGG ACAAUUGGAGCA AUUGA  CCCUUAC    GUUAG  UGAA  UUUGAAAGUGA AGA UUUUGGUA GUUU   C AGAAAGUAA     UGAAUCCAAGUUUC AGCACAU GUCUUUAC    GUGUG CA            CUGG AGCCUACCAGAU ACCAUU UGAUUGUU      AGUGUU CC     UAUUUUGCA    CUC UA  C    ||||||| |||| |||||||||| |||||||||||| |||||  |||||||    |||||  ||||  ||||||||||| ||| |||||||| ||||   | |||||||||     |||||||||||||| ||||||| ||||||||    ||||| ||            |||| |||||||||||| |||||| ||||||||      |||||| ||     |||||||||    ||| ||    AACCUAC CUCU ACACAAACUC UGUUAACCUUGU UAGCU  GGGAAUG    CAAUU  ACUU  AAAUUUUCACU UCU AAAACCAU CAAA   G UUUUUCAUU     ACUUAGGUUCAAAG UCGUGUG UAGAAAUG    CACAC GU            GAUC UCGGGUGGUCUA UGGUAA ACUAACAA      UUACAA GG     AUGAAACGU    GAG GU  A ---       U    C          A            C     AG       AAGG     GA    GA           C   C        A    ACU C         ----A              C       U        AAAC     -  AUUACUACUUAA    -            C      U        UUUACC      -  UUGAG         ----   C  UA
Stem-loop sequence	UCUUUGGAUGCGAGAAUGUGUUUGGGGACAAUUGGAGCAAAUUGACUCCCUUACGGUUAGUAUGAAGGUUUGAAAGUGAAAGAUUUUUGGUACGUUUCUAGAAAGUAAAUAAAUGAAUCCAAGUUUCAAGCACAUUGUCUUUACACUAGUGUGGCAGGCUGGCAGCCUACCAGAUAACCAUUUUGAUUGUUCAUAAAGUGUUACCUUCAUAUUUUGCAAAACCUCUUAUCCAAUUGCGAGUGCAAAGUAGAGUUGGAACAUUCCAUUUAACAAUCAUAAUGGUCAUCUGGUGGGCUCUAGAAUUCAUCAUUAUGCACACCAAAGUAAAGAUUGUGUGCUCGAAACUUGGAUUCAAUUACUUUUUCGUCAAAACAUACCAAAACUCUCUCACUUUUAAAAGUUCAAGUUAACGGAAGUAAGGGGAUCGAUCUGUUCCAAUUGUACUCAAACACACUCUCUCAUCCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_114363.4	ncRNA:21   UUUCACUCUCUCAAAACCAUA   1   *||||||||||||||||*||| targets:1200   CAAGUGAGAGAGUUUUGCUAU   1220 Target Full Sequence	1.5	Arabidopsis thaliana enabled-like protein (DUF1635) mRNA	enabled-like protein (DUF1635)(AT3G44940)	coding protein	psRNATarget
BT002815.1	ncRNA:21   UUUCACUCUCUCAAAACCAUA   1   *||||||||||||||||*||| targets:1122   CAAGUGAGAGAGUUUUGCUAU   1142 Target Full Sequence	1.5	Arabidopsis thaliana clone RAFL14-87-F11 (R20195) unknown protein (At3g44940) mRNA, complete cds	NA	coding protein	psRNATarget
NM_120279.3	ncRNA:21   UUUCACUCUCUCAAAACCAUA   1   =|=|*||*||||||||||||| targets:914   GAGGAGACAGAGUUUUGGUAU   934 Target Full Sequence	3.0	Arabidopsis thaliana RHO guanyl-nucleotide exchange factor 7 (ROPGEF7), mRNA	RHO guanyl-nucleotide exchange factor 7(ROPGEF7)	coding protein	psRNATarget
BX832677.1	ncRNA:21   UUUCACUCUCUCAAAACCAUA   1   =|=|*||*||||||||||||| targets:744   GAGGAGACAGAGUUUUGGUAU   764 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH8ZA11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BX831766.1	ncRNA:21   UUUCACUCUCUCAAAACCAUA   1   =|=|*||*||||||||||||| targets:914   GAGGAGACAGAGUUUUGGUAU   934 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH28ZG06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BT015831.1	ncRNA:21   UUUCACUCUCUCAAAACCAUA   1   =|=|*||*||||||||||||| targets:736   GAGGAGACAGAGUUUUGGUAU   756 Target Full Sequence	3.0	Arabidopsis thaliana At5g02010 gene, complete cds	NA	coding protein	psRNATarget
BT020213.1	ncRNA:21   UUUCACUCUCUCAAAACCAUA   1   =|=|*||*||||||||||||| targets:574   GAGGAGACAGAGUUUUGGUAU   594 Target Full Sequence	3.0	Arabidopsis thaliana At5g02010 mRNA, complete cds	NA	coding protein	psRNATarget
BX830015.1	ncRNA:21   UUUCACUCUCUCAAAACCAUA   1   =|=|*||*||||||||||||| targets:96   GAGGAGACAGAGUUUUGGUAU   116 Target Full Sequence	3.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB53ZC02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget

Reference

1	PMID:21940835 "High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012).