ncRNA ID | novel_gma_miR8247 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr8:30677291-30677404 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451616 |
Length | 21 |
Mature sequence(if miRNA) | 94 - CGACAGUUCCAAUUCCCUGGC - 114 |
Stem-loop(if miRNA) |
--   A          C   A         CA   GA    C  -----     A   UC   CAG GAAUUGGAAU GUC GAUGAAGAU  GAU  UUCA AU     CUCAA UGG  C   ||| |||||||||| ||| |||||||||  |||  |||| ||     ||||| |||   GUC CUUAACCUUG CAG CUACUUUUA  CUG  GAGU UA     GAGUU AUU  A CG   C          A   C         AC   UC    C  AAAUU     -   UA |
Stem-loop sequence | CAGAGAAUUGGAAUCGUCAGAUGAAGAUCAGAUGAUUCACAUCUCAAAUGGUCCAAUUUAUUGAGUUAAAAUCUGAGCUGUCCAAUUUUCAUCCGACAGUUCCAAUUCCCUGGC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_014771206.1 |
|
2.5 | PREDICTED: Glycine max RNA-binding KH domain-containing protein PEPPER-like (LOC100799689), transcript variant X2, mRNA | RNA-binding KH domain-containing protein PEPPER-like(LOC100799689) | coding protein | psRNATarget |