Search result

BaseInfo

ncRNA ID novel_gma_miR8245
Species Glycine max
Class miRNA
Genome position Chr11:3485377-3485540 [+]
Reference genome Glycine_max_v2.0
Source SRR1451616
Length 24
Mature sequence(if miRNA) 141 - AUGAGAAGGAACAAUAGAGAAGUC - 164
Stem-loop(if miRNA) --        C   -      U               -----   U      AACA     CAACAA     ----    U        G
  CUUCUUUG UGU CUUUCU CAUGUUGUCUCUGUG     CCA UAAAAU    AUGUA      UCGUG    UUAA AUUUAAUG U
  |||||||| ||| |||||| |||||||||||||||     ||| ||||||    |||||      |||||    |||| ||||||||
  GAAGAGAU ACA GGAAGA GUACAACAGGGACAC     GGU AUUUUA    UAUAU      AGUAC    AAUU UAAAUUAC G
CU        A   A      -               AACAG   U      ---G     --CUAA     UAAA    U        A
Stem-loop sequence CUUCUUUGCUGUCUUUCUUCAUGUUGUCUCUGUGCCAUUAAAAUAACAAUGUACAACAAUCGUGUUAAUAUUUAAUGGUGACAUUAAAUUUUAAAAAUCAUGAAAUCUAUAUGAUUUUAUUGGGACAACACAGGGACAACAUGAGAAGGAACAAUAGAGAAGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003546387.3
ncRNA:24   CUGAAGAGAUAACAAGGAAGAGUA   1
  *|=||*||*|||||||||||||||
targets:2018   AAUUUGUCCAUUGUUCCUUCUCAU   2041

2.0 PREDICTED: Glycine max DNA ligase 4 (LOC100816002), mRNA DNA ligase 4(LOC100816002) coding protein psRNATarget