ncRNA ID | novel_gma_miR8245 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr11:3485377-3485540 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451616 |
Length | 24 |
Mature sequence(if miRNA) | 141 - AUGAGAAGGAACAAUAGAGAAGUC - 164 |
Stem-loop(if miRNA) |
--        C   -      U               -----   U      AACA     CAACAA     ----    U        G   CUUCUUUG UGU CUUUCU CAUGUUGUCUCUGUG     CCA UAAAAU    AUGUA      UCGUG    UUAA AUUUAAUG U   |||||||| ||| |||||| |||||||||||||||     ||| ||||||    |||||      |||||    |||| ||||||||   GAAGAGAU ACA GGAAGA GUACAACAGGGACAC     GGU AUUUUA    UAUAU      AGUAC    AAUU UAAAUUAC G CU        A   A      -               AACAG   U      ---G     --CUAA     UAAA    U        A |
Stem-loop sequence | CUUCUUUGCUGUCUUUCUUCAUGUUGUCUCUGUGCCAUUAAAAUAACAAUGUACAACAAUCGUGUUAAUAUUUAAUGGUGACAUUAAAUUUUAAAAAUCAUGAAAUCUAUAUGAUUUUAUUGGGACAACACAGGGACAACAUGAGAAGGAACAAUAGAGAAGUC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003546387.3 |
|
2.0 | PREDICTED: Glycine max DNA ligase 4 (LOC100816002), mRNA | DNA ligase 4(LOC100816002) | coding protein | psRNATarget |