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BaseInfo

ncRNA ID novel_gma_miR8240
Species Glycine max
Class miRNA
Genome position Chr5:17913779-17913869 [+]
Reference genome Glycine_max_v2.0
Source SRR1294476
Length 24
Mature sequence(if miRNA) 1 - GAAACGGAGGAUGUCAGGCUUGAU - 24
Stem-loop(if miRNA) GAAAC     -------AUG         -   A   UCCA       UUAA
     GGAGG          UCAGGCUUG AUG UUU    AAACUUC    U
     |||||          ||||||||| ||| |||    |||||||    G
     CCUUC          GGUCCGGGC UAC AGA    UUUGAAG    A
----A     GCUAUUUUCA         C   C   ----       UUCA
Stem-loop sequence GAAACGGAGGAUGUCAGGCUUGAUGAUUUUCCAAAACUUCUUAAUGAACUUGAAGUUUAGACCAUCCGGGCCUGGACUUUUAUCGCUUCCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003530884.3
ncRNA:24   UAGUUCGGACUGUAGGAGGCAAAG   1
  =|*=||||*||*||||||||||||
targets:234   GUGGAGCCGGAGAUCCUCCGUUUC   257

2.5 PREDICTED: Glycine max 40S ribosomal protein S16-like (LOC100816874), mRNA 40S ribosomal protein S16-like(LOC100816874) coding protein psRNATarget