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BaseInfo

ncRNA ID novel_gma_miR8185
Species Glycine max
Class miRNA
Genome position Chr15:8497804-8497921 [+]
Reference genome Glycine_max_v2.0
Source SRR1451615
Length 21
Mature sequence(if miRNA) 1 - UUUUAUUGGACGUUGACCACC - 21
Stem-loop(if miRNA) --         A        A      C UG GA      G   GGUUGA        AG U
  UUUUAUUGG CGUUGACC CCACGU U  U  UUUUAU GGA      CGUUAAUU  G G
  ||||||||| |||||||| |||||| |  |  |||||| |||      ||||||||  |
  AAAAUAACC GCAACUGG GGUGUA A  G  AAAAUA CCU      GCAAUUAA  C C
CG         C        C      C GU UG      A   ------        AA A
Stem-loop sequence UUUUAUUGGACGUUGACCACCACGUCUUGUGAUUUUAUGGGAGGUUGACGUUAAUUAGGUGCACAAAAUUAACGUCCAAUAAAAGUGUGACAUGUGGCGGUCAACGCCCAAUAAAAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003545763.3
ncRNA:21   CCACCAGUUGCAGGUUAUUUU   1
  ||*||||||||||||||||||
targets:340   GGCGGUCAACGUCCAAUAAAA   360

1.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g09220, mitochondrial-like (LOC100810110), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At1g09220, mitochondrial-like(LOC100810110) coding protein psRNATarget
XM_006598012.2
ncRNA:21   CCACCAGUUGCAGGUUAUUUU   1
  ||*||||||||||||||||||
targets:269   GGCGGUCAACGUCCAAUAAAA   289

1.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g09220, mitochondrial-like (LOC100810110), transcript variant X2, mRNA pentatricopeptide repeat-containing protein At1g09220, mitochondrial-like(LOC100810110) coding protein psRNATarget