Search result

BaseInfo

ncRNA ID	novel_gma_miR8164
Species	Glycine max
Class	miRNA
Genome position	Chr14:10307058-10307112 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451615
Length	20
Mature sequence(if miRNA)	36 - UUUACGGAUCAAGUUGAUUU - 55
Stem-loop(if miRNA)	--            G               UUUACGGAUCAA UUGAUUUGUAAGU   |||||||||||| ||||||||||||C   GAAUGCCUAGUU AACUAGGCGUUCA AA            G
Stem-loop sequence	UUUACGGAUCAAGUUGAUUUGUAAGUCACUUGCGGAUCAAGUUGAUCCGUAAGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014768353.1	ncRNA:20   UUUAGUUGAACUAGGCAUUU   1   ==|||||||||||||||||| targets:487   GGAUCAACUUGAUCCGUAAA   506 Target Full Sequence	1.0	PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA	CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524)	coding protein	psRNATarget
XM_006600975.2	ncRNA:20   UUUAGUUGAACUAGGCAUUU   1   |=||=||||||||||||||| targets:1227   AGAUUAACUUGAUCCGUAAA   1246 Target Full Sequence	2.0	PREDICTED: Glycine max basic leucine zipper 9-like (LOC100776831), mRNA	basic leucine zipper 9-like(LOC100776831)	coding protein	psRNATarget
XM_006600975.2	ncRNA:20   UUUAGUUGAACUAGGCAUUU   1   ==|||||||||||||||||= targets:1255   GGAUCAACUUGAUCCGUAAG   1274 Target Full Sequence	2.0	PREDICTED: Glycine max basic leucine zipper 9-like (LOC100776831), mRNA	basic leucine zipper 9-like(LOC100776831)	coding protein	psRNATarget
XM_014768353.1	ncRNA:20   UUUAGUUGAACUAGGCAUUU   1   ==|||||||||||||||||= targets:1055   GGAUCAACUUGAUCCGUAAG   1074 Target Full Sequence	2.0	PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA	CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524)	coding protein	psRNATarget
XM_003547498.3	ncRNA:20   UUUAGUUGAACUAGGCAUUU   1   ==|||||||||||||||||= targets:460   GGAUCAACUUGAUCCGUAAG   479 Target Full Sequence	2.0	PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X1, mRNA	CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524)	coding protein	psRNATarget
XM_014768353.1	ncRNA:20   UUUAGUUGAACUAGGCAUUU   1   |=|||||*|||||||||||| targets:686   AGAUCAAAUUGAUCCGUAAA   705 Target Full Sequence	2.5	PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA	CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524)	coding protein	psRNATarget
XM_003547498.3	ncRNA:20   UUUAGUUGAACUAGGCAUUU   1   |=|||||*|||||||||||| targets:91   AGAUCAAAUUGAUCCGUAAA   110 Target Full Sequence	2.5	PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X1, mRNA	CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524)	coding protein	psRNATarget
XM_003524153.3	ncRNA:20   UUUAGUUGAACUAGGCAUUU   1   ==|||||*|||||||||||| targets:237   GGAUCAAGUUGAUCCGUAAA   256 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100805437 (LOC100805437), mRNA	uncharacterized LOC100805437(LOC100805437)	coding protein	psRNATarget
XM_014768353.1	ncRNA:20   UUUAGUUGAACUAGGCAUUU   1   ==||=||||||||||||||* targets:622   GGAUUAACUUGAUCCGUAAU   641 Target Full Sequence	3.0	PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA	CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524)	coding protein	psRNATarget
XM_003547498.3	ncRNA:20   UUUAGUUGAACUAGGCAUUU   1   ==||=||||||||||||||* targets:27   GGAUUAACUUGAUCCGUAAU   46 Target Full Sequence	3.0	PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X1, mRNA	CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524)	coding protein	psRNATarget