| ncRNA ID | ath-miR5645c |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr3:14742421-14742804 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 356 - AACCUAUUUAACGACAUGACU - 376 |
| Stem-loop(if miRNA) |
C G A -UU A UC CUG A U GAC --- GACGUCGUUUUAUCUGUUGAAACAAAUUUUAAACCCUAAAUCCCCAAAUCGAUUUCAUUAUCUCAAAUCCUAUAGAGGCCG CCAUUU AGUCAUGUUGUUAAAUAGGUUA UAGAA UUUUACG CGUUAAUGU CGUUUAU CUCUGUUAGAACAAAAC AUGUCGUUUAU ACAGA AAA C A |||||| |||||||||||||||||||||| ||||| ||||||| ||||||||| ||||||| ||||||||||||||||| ||||||||||| ||||| ||| | A GGUAAA UCAGUACAGCAAUUUAUCCAAU GUUUU AAAAUGC GCAAUUACA GCAAAUA GAGAUAAUUUUGUUUUG UACAGUAGAUG AGUUG AAG G U C G A UAU C GA AAA C A --- GAA AAGGCAAAAAAGAAAAAAAAAAAGCUAAACUAAACCCGACUCCUUGUAACAAACAGAGGAGUGGUCUACCCUAAGUUUAGC |
| Stem-loop sequence | CCCAUUUGAGUCAUGUUGUUAAAUAGGUUAAUAGAAUUUUUUACGACGUUAAUGUUCCGUUUAUCUGCUCUGUUAGAACAAAACAAUGUCGUUUAUUACAGAGACAAACGACGUCGUUUUAUCUGUUGAAACAAAUUUUAAACCCUAAAUCCCCAAAUCGAUUUCAUUAUCUCAAAUCCUAUAGAGGCCGAAUCGAUUUGAAUCCCAUCUGGUGAGGAGACAAACAAUGUUCCUCAGCCCAAAUCAAAUCGAAAAAAAAAAAGAAAAAACGGAAGAAGGAAGUUGAAGUAGAUGACAUCGUUUUGUUUUAAUAGAGAAAAUAAACGAGACAUUAACGCCGUAAAAUAUUUUUGAUAACCUAUUUAACGACAUGACUGAAAUGGC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NM_103223.4 |
|
1.0 | Arabidopsis thaliana Thioesterase superfamily protein mRNA | Thioesterase superfamily protein(AT1G35250) | coding protein | psRNATarget | |||||||||
| NM_001333146.1 |
|
1.0 | Arabidopsis thaliana Thioesterase superfamily protein mRNA | Thioesterase superfamily protein(AT1G35250) | coding protein | psRNATarget |
| 1 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |