ncRNA ID | novel_gma_miR8142 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr14:4546526-4546656 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451615 |
Length | 21 |
Mature sequence(if miRNA) | 1 - UUGCUGUCUUUUUUCCAACUG - 21 |
Stem-loop(if miRNA) |
--UUGC          C  AC       G  C    - A  -U    A   UAAUA     UU   U       UGUCUUUUUU CA  UGUUCUU UG UGUU C UG  AGUU UGU     UUUAA  UUG G       |||||||||| ||  ||||||| || |||| | ||  |||| |||     |||||  ||| A       ACAGAGAAAA GU  ACAGGGA AU ACAA G AC  UUAA ACG     AAAUU  AAC U AAGAUA          A  CA       G  A    A A  UU    C   --UCA     UU   U |
Stem-loop sequence | UUGCUGUCUUUUUUCCAACUGUUCUUGUGCUGUUCAUGUAGUUAUGUUAAUAUUUAAUUUUGUGAUUCAAUUUUAAAACUGCACAAUUUUCAAGAAACAAUAGAGGGACAACUGAAAAAGAGACAAUAGAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_006594346.2 |
|
2.5 | PREDICTED: Glycine max protein FRA10AC1-like (LOC100796936), transcript variant X2, mRNA | protein FRA10AC1-like(LOC100796936) | coding protein | psRNATarget | |||||||||
XM_006594347.2 |
|
2.5 | PREDICTED: Glycine max protein FRA10AC1-like (LOC100796936), transcript variant X3, mRNA | protein FRA10AC1-like(LOC100796936) | coding protein | psRNATarget | |||||||||
XM_003541562.3 |
|
2.5 | PREDICTED: Glycine max protein FRA10AC1-like (LOC100796936), transcript variant X1, mRNA | protein FRA10AC1-like(LOC100796936) | coding protein | psRNATarget |