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BaseInfo

ncRNA ID novel_gma_miR8138
Species Glycine max
Class miRNA
Genome position Chr1:45656353-45656559 [-]
Reference genome Glycine_max_v2.0
Source SRR1451615
Length 21
Mature sequence(if miRNA) 1 - UUCAAACUUGGCUGUUGUACC - 21
Stem-loop(if miRNA) -UA   U   AA           UACA    CGAU ---     UAUGGAAAGGUAAACUUGUAGAAAACAAAUGGCAAAGUUUUAGAGACUCCAAAAUGAUUUUAGG
   ACA UAG  AAGUUUGAACU    AUGC    C   AUGCA                                                                A
   ||| |||  |||||||||||    ||||    |   |||||
   UGU GUC  UUCAAACUUGG    AGAA    U   UACGU                                                                U
CCA   U   GG           ---U    ---- GUU     AACUUCCUCCCAGAUGUAUAGUUCUUACGUUGUAUGUUAUACAACAUUUUCGGAGCACCAAAGC
Stem-loop sequence UAACAUUAGAAAAGUUUGAACUUACAAUGCCGAUCAUGCAUAUGGAAAGGUAAACUUGUAGAAAACAAAUGGCAAAGUUUUAGAGACUCCAAAAUGAUUUUAGGAUCGAAACCACGAGGCUUUUACAACAUAUUGUAUGUUGCAUUCUUGAUAUGUAGACCCUCCUUCAAUGCAUUUGUAAGAUGGUUCAAACUUGGCUGUUGUACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014775065.1
ncRNA:21   CCAUGUUGUCGGUUCAAACUU   1
  |||||||||||||||||||||
targets:288   GGUACAACAGCCAAGUUUGAA   308

0.0 PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X4, mRNA uncharacterized LOC102659952(LOC102659952) coding protein psRNATarget
XM_014775059.1
ncRNA:21   CCAUGUUGUCGGUUCAAACUU   1
  |||||||||||||||||||||
targets:285   GGUACAACAGCCAAGUUUGAA   305

0.0 PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X1, mRNA uncharacterized LOC102659952(LOC102659952) coding protein psRNATarget
XM_014775066.1
ncRNA:21   CCAUGUUGUCGGUUCAAACUU   1
  |||||||||||||||||||||
targets:285   GGUACAACAGCCAAGUUUGAA   305

0.0 PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X5, mRNA uncharacterized LOC102659952(LOC102659952) coding protein psRNATarget
XM_014775062.1
ncRNA:21   CCAUGUUGUCGGUUCAAACUU   1
  |||||||||||||||||||||
targets:286   GGUACAACAGCCAAGUUUGAA   306

0.0 PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X3, mRNA uncharacterized LOC102659952(LOC102659952) coding protein psRNATarget
XM_014775060.1
ncRNA:21   CCAUGUUGUCGGUUCAAACUU   1
  |||||||||||||||||||||
targets:286   GGUACAACAGCCAAGUUUGAA   306

0.0 PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X2, mRNA uncharacterized LOC102659952(LOC102659952) coding protein psRNATarget
BT091481.1
ncRNA:21   CCAUGUUGUCGGUUCAAACUU   1
  **||||||||=||||||||||
targets:346   UCUACAACAGUCAAGUUUGAA   366

1.5 Soybean clone JCVI-FLGm-8G19 unknown mRNA NA coding protein psRNATarget
BT089545.1
ncRNA:21   CCAUGUUGUCGGUUCAAACUU   1
  **||||||||=||||||||||
targets:419   UCUACAACAGUCAAGUUUGAA   439

1.5 Soybean clone JCVI-FLGm-2A14 unknown mRNA NA coding protein psRNATarget
XM_003556196.3
ncRNA:21   CCAUGUUGUCGGUUCAAACUU   1
  **||||||||=||||||||||
targets:483   UCUACAACAGUCAAGUUUGAA   503

1.5 PREDICTED: Glycine max ras-related protein RABF1 (LOC100500544), transcript variant X2, mRNA ras-related protein RABF1(LOC100500544) coding protein psRNATarget
NM_001249508.3
ncRNA:21   CCAUGUUGUCGGUUCAAACUU   1
  **||||||||=||||||||||
targets:495   UCUACAACAGUCAAGUUUGAA   515

1.5 Glycine max P-loop NTPase domain superfamily protein (LOC100305769), mRNA uncharacterized LOC100305769(LOC100305769) coding protein psRNATarget
XM_014762510.1
ncRNA:21   CCAUGUUGUCGGUUCAAACUU   1
  **||||||||=||||||||||
targets:497   UCUACAACAGUCAAGUUUGAA   517

1.5 PREDICTED: Glycine max uncharacterized LOC100305769 (LOC100305769), transcript variant X1, mRNA uncharacterized LOC100305769(LOC100305769) coding protein psRNATarget
XM_006606203.2
ncRNA:21   CCAUGUUGUCGGUUCAAACUU   1
  **||||||||=||||||||||
targets:486   UCUACAACAGUCAAGUUUGAA   506

1.5 PREDICTED: Glycine max ras-related protein RABF1 (LOC100500544), transcript variant X1, mRNA ras-related protein RABF1(LOC100500544) coding protein psRNATarget
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