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BaseInfo

ncRNA ID novel_gma_miR8117
Species Glycine max
Class miRNA
Genome position Chr13:41764597-41764743 [-]
Reference genome Glycine_max_v2.0
Source SRR1451615
Length 21
Mature sequence(if miRNA) 1 - AGGUGCAGGUGCAUCUGCAGG - 21
Stem-loop(if miRNA) --    UU              AA  A   A  UU      -GA     ----A         ----A  AUG      
  UGCA  UGCACCUGCACUUU  GU CUC GU  CUCUGU   CAUAU     AAUAAUAUA     CU   UCAGUUG
  ||||  ||||||||||||||  || ||| ||  ||||||   |||||     |||||||||     ||   ||||||A
  ACGU  ACGUGGACGUGGAG  CA GAG CA  GAGAUA   GUAUA     UUAUUAUAU     GA   AGUCAGG
GG    CU              --  A   C  GG      AGG     AUAUA         AACUA  -GA      
Stem-loop sequence UGCAUUUGCACCUGCACUUUAAGUACUCAGUUUCUCUGUGACAUAUAAAUAAUAUAACUAUGUCAGUUGAGGACUGAAGAGAUCAAUAUAUUAUUAUAUAAUAUGGGAAUAGAGGGACCGAGAACGAGGUGCAGGUGCAUCUGCAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003545008.3
ncRNA:21   GGACGUCUACGUGGACGUGGA   1
  ||||||**|||||||||||||
targets:675   CCUGCACCUGCACCUGCACCU   695

2.0 PREDICTED: Glycine max epidermal growth factor receptor substrate 15-like 1 (LOC100794495), mRNA epidermal growth factor receptor substrate 15-like 1(LOC100794495) coding protein psRNATarget
HM165474.1
ncRNA:21   GGACGUCUACGUGGACGUGGA   1
  *=||||*||||||||||||=|
targets:584   GUUGCAAAUGCACCUGCACUU   604

2.5 Glycine max cultivar Dabaimei dense and erect pancile 1 mRNA, complete cds NA coding protein psRNATarget
BT095006.1
ncRNA:21   GGACGUCUACGUGGACGUGGA   1
  *=||||*||||||||||||=|
targets:646   GUUGCAAAUGCACCUGCACUU   666

2.5 Soybean clone JCVI-FLGm-14H4 unknown mRNA NA coding protein psRNATarget
NM_001255299.1
ncRNA:21   GGACGUCUACGUGGACGUGGA   1
  *=||||*||||||||||||=|
targets:646   GUUGCAAAUGCACCUGCACUU   666

2.5 Glycine max uncharacterized LOC100783447 (LOC100783447), mRNA uncharacterized LOC100783447(LOC100783447) coding protein psRNATarget
XM_006593892.2
ncRNA:21   GGACGUCUACGUGGACGUGGA   1
  *=||||*||||||||||||=|
targets:1153   GUUGCAAAUGCACCUGCACUU   1173

2.5 PREDICTED: Glycine max guanine nucleotide-binding protein subunit gamma 3-like (LOC100787066), transcript variant X2, mRNA guanine nucleotide-binding protein subunit gamma 3-like(LOC100787066) coding protein psRNATarget
XM_006593891.2
ncRNA:21   GGACGUCUACGUGGACGUGGA   1
  *=||||*||||||||||||=|
targets:1168   GUUGCAAAUGCACCUGCACUU   1188

2.5 PREDICTED: Glycine max guanine nucleotide-binding protein subunit gamma 3-like (LOC100787066), transcript variant X1, mRNA guanine nucleotide-binding protein subunit gamma 3-like(LOC100787066) coding protein psRNATarget
AK286963.1
ncRNA:21   GGACGUCUACGUGGACGUGGA   1
  *||||||*||||*||||||||
targets:31   GCUGCAGCUGCAGCUGCACCU   51

2.5 Glycine max cDNA, clone: GMFL01-41-B22 NA coding protein psRNATarget
XM_003517449.3
ncRNA:21   GGACGUCUACGUGGACGUGGA   1
  *||||||*||||*||||||||
targets:120   GCUGCAGCUGCAGCUGCACCU   140

2.5 PREDICTED: Glycine max crooked neck-like protein 1 (LOC100811745), mRNA crooked neck-like protein 1(LOC100811745) coding protein psRNATarget
XM_014778370.1
ncRNA:21   GGACGUCUACGUGGACGUGGA   1
  ||||||**||||||||||||*
targets:408   CCUGCACCUGCACCUGCACCA   428

3.0 PREDICTED: Glycine max putative DNA repair protein RAD23-3-like (LOC100813881), transcript variant X3, mRNA putative DNA repair protein RAD23-3-like(LOC100813881) coding protein psRNATarget
BT094201.1
ncRNA:21   GGACGUCUACGUGGACGUGGA   1
  ||||||**||||||||||||*
targets:491   CCUGCACCUGCACCUGCACCA   511

3.0 Soybean clone JCVI-FLGm-18G10 unknown mRNA NA coding protein psRNATarget
NM_001255169.2
ncRNA:21   GGACGUCUACGUGGACGUGGA   1
  ||||||**||||||||||||*
targets:556   CCUGCACCUGCACCUGCACCA   576

3.0 Glycine max putative DNA repair protein RAD23-3-like (LOC100813881), mRNA putative DNA repair protein RAD23-3-like(LOC100813881) coding protein psRNATarget
BT096915.1
ncRNA:21   GGACGUCUACGUGGACGUGGA   1
  ||||||**||||||||||||*
targets:558   CCUGCACCUGCACCUGCACCA   578

3.0 Soybean clone JCVI-FLGm-25L10 unknown mRNA NA coding protein psRNATarget
XM_006584545.2
ncRNA:21   GGACGUCUACGUGGACGUGGA   1
  ||||||**||||||||||||*
targets:542   CCUGCACCUGCACCUGCACCA   562

3.0 PREDICTED: Glycine max putative DNA repair protein RAD23-3-like (LOC100813881), transcript variant X2, mRNA putative DNA repair protein RAD23-3-like(LOC100813881) coding protein psRNATarget
XM_006584542.2
ncRNA:21   GGACGUCUACGUGGACGUGGA   1
  ||||||**||||||||||||*
targets:802   CCUGCACCUGCACCUGCACCA   822

3.0 PREDICTED: Glycine max putative DNA repair protein RAD23-3-like (LOC100813881), transcript variant X1, mRNA putative DNA repair protein RAD23-3-like(LOC100813881) coding protein psRNATarget
AK245188.1
ncRNA:21   GGACGUCUACGUGGACGUGGA   1
  ||||||**||||||||||||*
targets:552   CCUGCAACUGCACCUGCACCA   572

3.0 Glycine max cDNA, clone: GMFL01-23-E10 NA coding protein psRNATarget
XM_003556156.3
ncRNA:21   GGACGUCUACGUGGACGUGGA   1
  ||||||**||||||||||||*
targets:690   CCUGCAACUGCACCUGCACCA   710

3.0 PREDICTED: Glycine max dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic (LOC100799926), mRNA dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic(LOC100799926) coding protein psRNATarget
AK245862.1
ncRNA:21   GGACGUCUACGUGGACGUGGA   1
  |||||***|||||||||||||
targets:733   CCUGCUCCUGCACCUGCACCU   753

3.0 Glycine max cDNA, clone: GMFL01-43-K04 NA coding protein psRNATarget
XM_003526935.3
ncRNA:21   GGACGUCUACGUGGACGUGGA   1
  |||||***|||||||||||||
targets:795   CCUGCUCCUGCACCUGCACCU   815

3.0 PREDICTED: Glycine max leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 (LOC100788151), mRNA leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1(LOC100788151) coding protein psRNATarget
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