Search result

BaseInfo

ncRNA ID novel_gma_miR8109
Species Glycine max
Class miRNA
Genome position Chr12:14320495-14320590 [+]
Reference genome Glycine_max_v2.0
Source SRR1451615
Length 24
Mature sequence(if miRNA) 1 - UCUGAUAGAAUUAAGAUCUUGGCC - 24
Stem-loop(if miRNA) --         A    --------GA    GGCCAAGACAAUUGAAUGAAAA
  UCUGAUAGA UUAA          UCUU                      A
  ||||||||| ||||          ||||                      A
  AGAUUAUUU GAUU          GUUA                      G
UG         -    GUGUAAAUUA    CUUACUGAAUUUUUUGAGAAAA
Stem-loop sequence UCUGAUAGAAUUAAGAUCUUGGCCAAGACAAUUGAAUGAAAAAAGAAAAGAGUUUUUUAAGUCAUUCAUUGAUUAAAUGUGUUAGUUUAUUAGAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003544726.3
ncRNA:24   CCG--GUUCUAGAAUUAAGAUAGUCU   1
  ||=--=|*||||||||||||=|||||
targets:1112   GGUAAUAUGAUCUUAAUUCUGUCAGA   1137

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor 3 (LOC100820249), mRNA ethylene-responsive transcription factor 3(LOC100820249) coding protein psRNATarget