Search result

BaseInfo

ncRNA ID	novel_gma_miR8061
Species	Glycine max
Class	miRNA
Genome position	Chr8:2221343-2221491 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451615
Length	22
Mature sequence(if miRNA)	1 - UUAGCUUAUGGAGAAACUCAUC - 22
Stem-loop(if miRNA)	--    C                   A    -C CAUUAGCUAAUUUGUAGAAGUUCUCUUAUAAAACUUUUCUA   UGAG UUCUCCAUAAGUUAAAAUG GUUC  C                                         A   |||| ||||||||||||||||||| ||||  |   ACUC AAGAGGUAUUCGAUUUUAC CAAG  G                                         A CU    A                   C    AG UAUUCGAUUGGUAAUCGAUUAAACAUCUACAAGAGAAUAAA
Stem-loop sequence	UGAGCUUCUCCAUAAGUUAAAAUGAGUUCCCCAUUAGCUAAUUUGUAGAAGUUCUCUUAUAAAACUUUUCUAAAAAAUAAGAGAACAUCUACAAAUUAGCUAAUGGUUAGCUUAUGGAGAACCCAUUUUAGCUUAUGGAGAAACUCAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006603606.2	ncRNA:22   CUACUCAAAGAGGUAUUCGAUU   1   *|||||||||||||||||=||| targets:1436   AAUGAGUUUCUCCAUAAGUUAA   1457 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100500460 (LOC100500460), transcript variant X1, mRNA	uncharacterized LOC100500460(LOC100500460)	coding protein	psRNATarget
XM_006603608.2	ncRNA:22   CUACUCAAAGAGGUAUUCGAUU   1   *|||||||||||||||||=||| targets:1446   AAUGAGUUUCUCCAUAAGUUAA   1467 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100500460 (LOC100500460), transcript variant X3, mRNA	uncharacterized LOC100500460(LOC100500460)	coding protein	psRNATarget
XM_006594197.2	ncRNA:22   CUACUCAAAGAGGUAUUCGAUU   1   *|||||*||||||||*|||||| targets:770   AAUGAGAUUCUCCAUUAGCUAA   791 Target Full Sequence	2.5	PREDICTED: Glycine max probable anion transporter 6, chloroplastic (LOC100806856), transcript variant X2, mRNA	probable anion transporter 6, chloroplastic(LOC100806856)	coding protein	psRNATarget
XM_003541440.3	ncRNA:22   CUACUCAAAGAGGUAUUCGAUU   1   *|||||*||||||||*|||||| targets:770   AAUGAGAUUCUCCAUUAGCUAA   791 Target Full Sequence	2.5	PREDICTED: Glycine max probable anion transporter 6, chloroplastic (LOC100806856), transcript variant X1, mRNA	probable anion transporter 6, chloroplastic(LOC100806856)	coding protein	psRNATarget