| ncRNA ID | ath-miR5642a |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr3:14196774-14197147 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 20 |
| Mature sequence(if miRNA) | 343 - UCUCGCGCUUGUACGGCUUU - 362 |
| Stem-loop(if miRNA) |
CAU -- U CC --- GA -- GCCCAUGGGCAUCGACACCUUGCGGCUAGGAACUGGAACGAGACGGGUAGCAAAGAUUUCGAGUAGCACUUCAUACUACCGUGGGUUUUUUAAACCUUCCCCUAGUUUUGUUGAUGUUAUUCCGAGAAUUAGCAAACC GGAUCC GCC AGGCUGU CGAGUGUGA GCGAGGUGU G UGUC G |||||| ||| ||||||| ||||||||| ||||||||| | |||| CUUAGG CGG UUCGGCA GUUCGCGCU UGGAAGCCC U CGGA U --G CU U -U CUA -- GU UCCGCCUAGGUACGAAAGGUUGCUUCGUGCGGGUAGGUUGGAUCCGCUCUGUUCCCAAGUGUAAAGCAAGUAGUGGGAACCGGCCGAAAGCUUGUCGGCCUGAGGGUAGUUUUCUACCAACGGUUCUUGUAGAAGCAA |
| Stem-loop sequence | CAUGGAUCCGCCUAGGCUGUCCCGAGUGUGAGCGAGGUGUGAGUGUCGCCCAUGGGCAUCGACACCUUGCGGCUAGGAACUGGAACGAGACGGGUAGCAAAGAUUUCGAGUAGCACUUCAUACUACCGUGGGUUUUUUAAACCUUCCCCUAGUUUUGUUGAUGUUAUUCCGAGAAUUAGCAAACCGUAACGAAGAUGUUCUUGGCAACCAUCUUUUGAUGGGAGUCCGGCUGUUCGAAAGCCGGCCAAGGGUGAUGAACGAAAUGUGAACCCUUGUCUCGCCUAGGUUGGAUGGGCGUGCUUCGUUGGAAAGCAUGGAUCCGCCUAGGCUGUCCCGAAGGUAUCUCGCGCUUGUACGGCUUUGGCUCGGAUUCG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EF183325.1 |
|
0.0 | Arabidopsis thaliana clone asmbl_5566 unknown mRNA sequence | NA | coding protein | psRNATarget |
| 1 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |