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BaseInfo

ncRNA ID novel_gma_miR8035
Species Glycine max
Class miRNA
Genome position Chr7:33048175-33048269 [+]
Reference genome Glycine_max_v2.0
Source SRR1451615
Length 21
Mature sequence(if miRNA) 1 - UUUAUUAAAUGUUUUGUGUAG - 21
Stem-loop(if miRNA) --       A              C       C   CUCCUAAAAAU
  UUUAUUA AUGUUUUGUGUAGC UAUGUUG UAA           G
  ||||||| |||||||||||||| ||||||| |||           U
  AAAUAGU UACAAGAUAUAUUG GUAUAAC AUU           C
UA       A              A       A   UCAAUAAAACA
Stem-loop sequence UUUAUUAAAUGUUUUGUGUAGCCUAUGUUGCUAACUCCUAAAAAUGUCACAAAAUAACUUUAACAAUAUGAGUUAUAUAGAACAUAUGAUAAAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014762863.1
ncRNA:19   UGUGUUUUGUAAAUUAUUU   1
  |=||||||||||*||||||
targets:1   AUACAAAACAUUGAAUAAA   19

2.5 PREDICTED: Glycine max dymeclin-like (LOC100794934), transcript variant X4, mRNA dymeclin-like(LOC100794934) coding protein psRNATarget
XM_006588474.2
ncRNA:19   UGUGUUUUGUAAAUUAUUU   1
  |=||||||||||*||||||
targets:1   AUACAAAACAUUGAAUAAA   19

2.5 PREDICTED: Glycine max dymeclin-like (LOC100794934), transcript variant X3, mRNA dymeclin-like(LOC100794934) coding protein psRNATarget
XM_014762862.1
ncRNA:20   AUGUGUUUUGUAAAUUAUUU   1
  *|=||||||||||*||||||
targets:1   GAUACAAAACAUUGAAUAAA   20

2.5 PREDICTED: Glycine max dymeclin-like (LOC100794934), transcript variant X2, mRNA dymeclin-like(LOC100794934) coding protein psRNATarget
BT099043.1
ncRNA:21   GAUGUGUUUUGUAAAUUAUUU   1
  =*|||==|||||||||||||*
targets:74   UAACAUGAAACAUUUAAUAAU   94

3.0 Soybean clone JCVI-FLGm-13K22 unknown mRNA NA coding protein psRNATarget
XM_006584043.2
ncRNA:21   GAUGUGUUUUGUAAAUUAUUU   1
  **=*||||||||||||||||=
targets:1489   AAGGACAAAACAUUUAAUAAG   1509

3.0 PREDICTED: Glycine max probable acetyl-CoA acetyltransferase, cytosolic 2 (LOC100500596), mRNA probable acetyl-CoA acetyltransferase, cytosolic 2(LOC100500596) coding protein psRNATarget
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