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BaseInfo

ncRNA ID	novel_gma_miR8033
Species	Glycine max
Class	miRNA
Genome position	Chr7:28903209-28903424 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451615
Length	22
Mature sequence(if miRNA)	195 - AAGGACAAAUAAUUAAGAAAGU - 216
Stem-loop(if miRNA)	--        C           A              CU    GCUA                         G   UC    AAA    G   UAUA           G   UUUCUUAA UAUUUGUCCUU AGAUUUUACUGUUU  UUUU    AUAUGUAAAUAUAAAUGGUAUAAGG UAU  CGUA   ACAU GUA    UUUACUUCUAA A   |||||||| ||||||||||| ||||||||||||||  ||||    ||||||||||||||||||||||||| |||  ||||   |||| |||    ||||||||||| U   AAAGAAUU AUAAACAGGAA UCUAAAAUGAUAAA  AAAG    UAUACAUUUAUAUUUAUUAUAUUCC AUA  GUAU   UGUA CAU    AAAUGGGGAUU U UG        A           G              AC    --AA                         G   CC    ACG    G   -UAA           G
Stem-loop sequence	UUUCUUAACUAUUUGUCCUUAAGAUUUUACUGUUUCUUUUUGCUAAUAUGUAAAUAUAAAUGGUAUAAGGGUAUUCCGUAAAAACAUGGUAUAUAUUUACUUCUAAGAUUGUUAGGGGUAAAAAUUACGAUGUGCAUAUGCCAUAGCCUUAUAUUAUUUAUAUUUACAUAUAAGAAACAAAAUAGUAAAAUCUGAAGGACAAAUAAUUAAGAAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006593804.2	ncRNA:22   UGAAAGAAUUAAUAAACAGGAA   1   ||||||||||*||||||||||| targets:1511   ACUUUCUUAACUAUUUGUCCUU   1532 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100783198 (LOC100783198), transcript variant X1, mRNA	uncharacterized LOC100783198(LOC100783198)	coding protein	psRNATarget
XM_006593805.2	ncRNA:22   UGAAAGAAUUAAUAAACAGGAA   1   ||||||||||*||||||||||| targets:1487   ACUUUCUUAACUAUUUGUCCUU   1508 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100783198 (LOC100783198), transcript variant X2, mRNA	uncharacterized LOC100783198(LOC100783198)	coding protein	psRNATarget
XM_006585823.2	ncRNA:22   UGAAAGAAUUAAUAAACAGGAA   1   ||||||||=|||||||||||*| targets:1314   ACUUUCUUGAUUAUUUGUCCAU   1335 Target Full Sequence	2.5	PREDICTED: Glycine max ASC1-like protein (LOC100782504), transcript variant X1, mRNA	ASC1-like protein(LOC100782504)	coding protein	psRNATarget
XM_003554179.3	ncRNA:22   UGAAAGAAUUAAUAAACAGGAA   1   ==||||*|||||*||||||||| targets:127   GUUUUCCUAAUUCUUUGUCCUU   148 Target Full Sequence	2.5	PREDICTED: Glycine max dirigent protein 22-like (LOC100816618), mRNA	dirigent protein 22-like(LOC100816618)	coding protein	psRNATarget
AK286510.1	ncRNA:22   UGAAAGAAUUAAUAAACAGGAA   1   ==||||*|||||*||||||||| targets:41   GUUUUCCUAAUUCUUUGUCCUU   62 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-30-C06	NA	coding protein	psRNATarget
AK286644.1	ncRNA:22   UGAAAGAAUUAAUAAACAGGAA   1   |*||||||*||||||||||*|| targets:996   AAUUUCUUCAUUAUUUGUCAUU   1017 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-33-G11	NA	coding protein	psRNATarget