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BaseInfo

ncRNA ID novel_gma_miR8028
Species Glycine max
Class miRNA
Genome position Chr6:5019439-5019510 [-]
Reference genome Glycine_max_v2.0
Source SRR1451615
Length 24
Mature sequence(if miRNA) 49 - UAAGGAGAUUUCUGAAUAUGCAUU - 72
Stem-loop(if miRNA) --     -AG       AA      UUU CU    UA
  UAAGG   AUUUCUG  UAUGCA   G  UUCA  U
  |||||   |||||||  ||||||   |  ||||  A
  AUUUC   UAAGGAC  AUAUGU   C  AAGU  U
AC     GCA       AC      --U UU    UC
Stem-loop sequence UAAGGAGAUUUCUGAAUAUGCAUUUGCUUUCAUAUAUCUUGAAUUCUUGUAUACACAGGAAUACGCUUUACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014777942.1
ncRNA:24   UUACGUAUAAGUCUUUAGAGGAAU   1
  ||--|*|=||||||||||||||||
targets:2100   AA--CUUGUUCAGAAAUCUCCUUA   2121

2.0 PREDICTED: Glycine max eukaryotic translation initiation factor 4G-like (LOC100798562), transcript variant X2, mRNA eukaryotic translation initiation factor 4G-like(LOC100798562) coding protein psRNATarget
XM_006583454.2
ncRNA:24   UUACGUAUAAGUCUUUAGAGGAAU   1
  ||--|*|=||||||||||||||||
targets:2109   AA--CUUGUUCAGAAAUCUCCUUA   2130

2.0 PREDICTED: Glycine max eukaryotic translation initiation factor 4G-like (LOC100798562), transcript variant X1, mRNA eukaryotic translation initiation factor 4G-like(LOC100798562) coding protein psRNATarget