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BaseInfo

ncRNA ID novel_gma_miR8010
Species Glycine max
Class miRNA
Genome position Chr5:11806886-11806952 [+]
Reference genome Glycine_max_v2.0
Source SRR1451615
Length 25
Mature sequence(if miRNA) 1 - AUGCAGGGAUUACUUUAGAAACAGA - 25
Stem-loop(if miRNA) --A    -   A       -       GACCCAU
   UGCA GGG UUACUUU AGAAACA       U
   |||| ||| ||||||| |||||||       U
   ACGU CCC AAUGAAA UCUUUGU       C
AGG    A   C       A       AAAAGAG
Stem-loop sequence AUGCAGGGAUUACUUUAGAAACAGACCCAUUUCGAGAAAAUGUUUCUAAAAGUAACCCCAUGCAGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014768435.1
ncRNA:25   AGACAAAGAUUUCAUUAGGGACGUA   1
  **||*|||||=||||||||*|||||
targets:1986   AAUGAUUCUAGAGUAAUCCGUGCAU   2010

2.5 PREDICTED: Glycine max protein CLEC16A-like (LOC100815334), transcript variant X4, mRNA protein CLEC16A-like(LOC100815334) coding protein psRNATarget
XM_006575227.2
ncRNA:25   AGACAAAGAUUUCAUUAGGGACGUA   1
  **||*|||||=||||||||*|||||
targets:2217   AAUGAUUCUAGAGUAAUCCGUGCAU   2241

2.5 PREDICTED: Glycine max protein CLEC16A-like (LOC100815334), transcript variant X2, mRNA protein CLEC16A-like(LOC100815334) coding protein psRNATarget
XM_014768430.1
ncRNA:25   AGACAAAGAUUUCAUUAGGGACGUA   1
  **||*|||||=||||||||*|||||
targets:2220   AAUGAUUCUAGAGUAAUCCGUGCAU   2244

2.5 PREDICTED: Glycine max protein CLEC16A-like (LOC100815334), transcript variant X1, mRNA protein CLEC16A-like(LOC100815334) coding protein psRNATarget