Search result

BaseInfo

ncRNA ID	novel_gma_miR7993
Species	Glycine max
Class	miRNA
Genome position	Chr5:26555019-26555079 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451615
Length	24
Mature sequence(if miRNA)	1 - ACUUUCAACAUCGAUUUUAGAACU - 24
Stem-loop(if miRNA)	--     C          --       UCAU   ACUUU AACAUCGAUU  UUAGAAC    G   ||||| ||||||||||  |||||||    U   UGAAA UUGUAGCUAA  AAUCUUG    A UG     A          UA       UAAG
Stem-loop sequence	ACUUUCAACAUCGAUUUUAGAACUCAUGUAGAAUGUUCUAAAUAAUCGAUGUUAAAAGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006585358.2	ncRNA:24   UCA--A--GAUUUUAGCUACAACUUUCA   1   |||--|--|||=||*||||||||||||* targets:1319   AGUGCUGACUAGAAACGAUGUUGAAAGC   1346 Target Full Sequence	3.0	PREDICTED: Glycine max high affinity sulfate transporter 2-like (LOC100815818), transcript variant X4, mRNA	high affinity sulfate transporter 2-like(LOC100815818)	coding protein	psRNATarget
XM_006585358.2	ncRNA:24   UCAAGAUUUUAGCUACAACUUUCA   1   ****|*|=||*||||||||||||| targets:1366   CUGGCGAGAAACGAUGUUGAAAGU   1389 Target Full Sequence	3.0	PREDICTED: Glycine max high affinity sulfate transporter 2-like (LOC100815818), transcript variant X4, mRNA	high affinity sulfate transporter 2-like(LOC100815818)	coding protein	psRNATarget
XM_006585356.2	ncRNA:24   UCA--A--GAUUUUAGCUACAACUUUCA   1   |||--|--|||=||*||||||||||||* targets:1385   AGUGCUGACUAGAAACGAUGUUGAAAGC   1412 Target Full Sequence	3.0	PREDICTED: Glycine max high affinity sulfate transporter 2-like (LOC100815818), transcript variant X2, mRNA	high affinity sulfate transporter 2-like(LOC100815818)	coding protein	psRNATarget
XM_006585356.2	ncRNA:24   UCAAGAUUUUAGCUACAACUUUCA   1   ****|*|=||*||||||||||||| targets:1432   CUGGCGAGAAACGAUGUUGAAAGU   1455 Target Full Sequence	3.0	PREDICTED: Glycine max high affinity sulfate transporter 2-like (LOC100815818), transcript variant X2, mRNA	high affinity sulfate transporter 2-like(LOC100815818)	coding protein	psRNATarget
XM_006585357.2	ncRNA:24   UCA--A--GAUUUUAGCUACAACUUUCA   1   |||--|--|||=||*||||||||||||* targets:1532   AGUGCUGACUAGAAACGAUGUUGAAAGC   1559 Target Full Sequence	3.0	PREDICTED: Glycine max high affinity sulfate transporter 2-like (LOC100815818), transcript variant X3, mRNA	high affinity sulfate transporter 2-like(LOC100815818)	coding protein	psRNATarget
XM_006585357.2	ncRNA:24   UCAAGAUUUUAGCUACAACUUUCA   1   ****|*|=||*||||||||||||| targets:1579   CUGGCGAGAAACGAUGUUGAAAGU   1602 Target Full Sequence	3.0	PREDICTED: Glycine max high affinity sulfate transporter 2-like (LOC100815818), transcript variant X3, mRNA	high affinity sulfate transporter 2-like(LOC100815818)	coding protein	psRNATarget
XM_006585355.2	ncRNA:24   UCA--A--GAUUUUAGCUACAACUUUCA   1   |||--|--|||=||*||||||||||||* targets:1583   AGUGCUGACUAGAAACGAUGUUGAAAGC   1610 Target Full Sequence	3.0	PREDICTED: Glycine max high affinity sulfate transporter 2-like (LOC100815818), transcript variant X1, mRNA	high affinity sulfate transporter 2-like(LOC100815818)	coding protein	psRNATarget
XM_006585355.2	ncRNA:24   UCAAGAUUUUAGCUACAACUUUCA   1   ****|*|=||*||||||||||||| targets:1630   CUGGCGAGAAACGAUGUUGAAAGU   1653 Target Full Sequence	3.0	PREDICTED: Glycine max high affinity sulfate transporter 2-like (LOC100815818), transcript variant X1, mRNA	high affinity sulfate transporter 2-like(LOC100815818)	coding protein	psRNATarget
XM_014774861.1	ncRNA:24   UCA--A--GAUUUUAGCUACAACUUUCA   1   =||--|--|||=||*||||||||||||* targets:1260   GGUGCUGACUAGAAACGAUGUUGAAAGC   1287 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC106798441 (LOC106798441), transcript variant X3, mRNA	uncharacterized LOC106798441(LOC106798441)	coding protein	psRNATarget