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BaseInfo

ncRNA ID novel_gma_miR7976
Species Glycine max
Class miRNA
Genome position Chr10:26767118-26767256 [+]
Reference genome Glycine_max_v2.0
Source SRR1451615
Length 21
Mature sequence(if miRNA) 119 - UUUCUAUGUGGAAGUAGGUCU - 139
Stem-loop(if miRNA) --     UUG  U  --     --CA    UC    A   ----   -  U   GCCU    UGACC     ACC
  ACCUG   CC CA  GAAAA    AGCC  CAGA GCU    GCA CA GUU    CAGC     CUGAA   A
  |||||   || ||  |||||    ||||  |||| |||    ||| || |||    ||||     |||||
  UGGAU   GG GU  CUUUU    UUGG  GUUU CGG    CGU GU CAA    GUCG     GACUU   A
UC     GAA  U  AU     UAUC    -U    A   AAUU   U  -   AGUU    UCAAA     CCG
Stem-loop sequence ACCUGUUGCCUCAGAAAACAAGCCUCCAGAAGCUGCACAUGUUGCCUCAGCUGACCCUGAAACCAAGCCUUCAGAAACUGCUGUUGAAACUGUUGCUUAAGGCAUUUGUGGUUCUAUUUUUCUAUGUGGAAGUAGGUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003541625.3
ncRNA:21   UCUGGAUGAAGGUGUAUCUUU   1
  =*||||||||||||=|||||*
targets:2485   GUACCUACUUCCACGUAGAAU   2505

2.5 PREDICTED: Glycine max probable beta-1,3-galactosyltransferase 20 (LOC100790430), mRNA probable beta-1,3-galactosyltransferase 20(LOC100790430) coding protein psRNATarget