Search result

BaseInfo

ncRNA ID novel_gma_miR7964
Species Glycine max
Class miRNA
Genome position Chr3:9594482-9594594 [-]
Reference genome Glycine_max_v2.0
Source SRR1451615
Length 22
Mature sequence(if miRNA) 1 - CAAUUCUGAUUGGAGAACAACA - 22
Stem-loop(if miRNA) --C  G        UG            CACCUCAA     CG     UAA     GC
   UG UUUUCAAU  GAGUUGGAGUUU        UAAUU  UGUUA   AUUUU  A
   || ||||||||  ||||||||||||        |||||  |||||   |||||
   AC AGAGGUUA  CUUAACCUCAAA        AUUAG  ACGAU   UAAGA  U
ACA  A        GU            AUUAAUCC     AU     ---     AU
Stem-loop sequence CUGGUUUUCAAUUGGAGUUGGAGUUUCACCUCAAUAAUUCGUGUUAUAAAUUUUGCAUUAAGAAUUAGCAUAGAUUACCUAAUUAAAACUCCAAUUCUGAUUGGAGAACAACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006588203.2
ncRNA:22   ACAACAAGAGGUUAGUCUUAAC   1
  *||||||=||||||||||||||
targets:246   GGUUGUUUUCCAAUCAGAAUUG   267

1.0 PREDICTED: Glycine max uncharacterized sugar kinase slr0537-like (LOC100792076), mRNA uncharacterized sugar kinase slr0537-like(LOC100792076) coding protein psRNATarget
XM_003544488.3
ncRNA:22   ACAACAAGAGGUUAGUCUUAAC   1
  |||||||||||*||||||||||
targets:1618   UGUUGUUCUCCUAUCAGAAUUG   1639

1.5 PREDICTED: Glycine max delta(8)-fatty-acid desaturase 2-like (LOC100775880), mRNA delta(8)-fatty-acid desaturase 2-like(LOC100775880) coding protein psRNATarget
XM_003550220.3
ncRNA:22   ACAACAAGAGGUUAGUCUUAAC   1
  ||*||||||||*||||||||||
targets:1734   UGGUGUUCUCCUAUCAGAAUUG   1755

1.5 PREDICTED: Glycine max delta(8)-fatty-acid desaturase 2-like (LOC100776476), mRNA delta(8)-fatty-acid desaturase 2-like(LOC100776476) coding protein psRNATarget
XM_006585935.2
ncRNA:22   ACAACAAGAGGUUAGUCUUAAC   1
  |*||||||||||||||*|||||
targets:427   UAUUGUUCUCCAAUCAAAAUUG   448

1.5 PREDICTED: Glycine max mucin-21-like (LOC100790656), transcript variant X3, mRNA mucin-21-like(LOC100790656) coding protein psRNATarget
XM_006585934.2
ncRNA:22   ACAACAAGAGGUUAGUCUUAAC   1
  |*||||||||||||||*|||||
targets:427   UAUUGUUCUCCAAUCAAAAUUG   448

1.5 PREDICTED: Glycine max mucin-21-like (LOC100790656), transcript variant X2, mRNA mucin-21-like(LOC100790656) coding protein psRNATarget
XM_003519237.3
ncRNA:22   ACAACAAGAGGUUAGUCUUAAC   1
  |||||||=|||||||||||||*
targets:1693   UGUUGUUUUCCAAUCAGAAUUA   1714

2.0 PREDICTED: Glycine max tyrosine--tRNA ligase, chloroplastic/mitochondrial-like (LOC100813016), mRNA tyrosine--tRNA ligase, chloroplastic/mitochondrial-like(LOC100813016) coding protein psRNATarget
XM_003542769.3
ncRNA:22   ACAACAAGAGGUUAGUCUUAAC   1
  *|*||||=|||||||||||||*
targets:1353   CGAUGUUUUCCAAUCAGAAUUA   1374

2.0 PREDICTED: Glycine max U-box domain-containing protein 11-like (LOC100819160), mRNA U-box domain-containing protein 11-like(LOC100819160) coding protein psRNATarget
NM_001317705.1
ncRNA:22   ACAACAAGAGGUUAGUCUUAAC   1
  |||||||=|=||||||||||||
targets:1502   UGUUGUUUUUCAAUCAGAAUUG   1523

2.5 Glycine max protein CHUP1, chloroplastic-like (LOC100819954), mRNA protein CHUP1, chloroplastic-like(LOC100819954) coding protein psRNATarget
BT096872.1
ncRNA:22   ACAACAAGAGGUUAGUCUUAAC   1
  |||||||=|=||||||||||||
targets:1504   UGUUGUUUUUCAAUCAGAAUUG   1525

2.5 Soybean clone JCVI-FLGm-25J10 unknown mRNA NA coding protein psRNATarget
BT095961.1
ncRNA:22   ACAACAAGAGGUUAGUCUUAAC   1
  *|*||||=|||=||||||||||
targets:544   CGCUGUUUUCCGAUCAGAAUUG   565

2.5 Soybean clone JCVI-FLGm-15G2 unknown mRNA NA coding protein psRNATarget
XM_003522635.3
ncRNA:22   ACAACAAGAGGUUAGUCUUAAC   1
  *|*||||=|||=||||||||||
targets:631   CGCUGUUUUCCGAUCAGAAUUG   652

2.5 PREDICTED: Glycine max uncharacterized LOC100798503 (LOC100798503), mRNA uncharacterized LOC100798503(LOC100798503) coding protein psRNATarget
XM_006594310.2
ncRNA:22   ACAACAAGAGGUUAGUCUUAAC   1
  ||*|*||||||=||||||||||
targets:208   UGCUAUUCUCCGAUCAGAAUUG   229

2.5 PREDICTED: Glycine max protein argonaute 6 (LOC100778875), transcript variant X5, mRNA protein argonaute 6(LOC100778875) coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.