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BaseInfo

ncRNA ID novel_gma_miR7956
Species Glycine max
Class miRNA
Genome position Chr10:3904610-3904689 [+]
Reference genome Glycine_max_v2.0
Source SRR1451615
Length 21
Mature sequence(if miRNA) 60 - UGGGUGUGUGAGGAUUCUGUU - 80
Stem-loop(if miRNA) --            --UA    UG UGUGUUAUU      U
  UAGGAUUUUCAU    UUAC  G         AGAGUA G
  ||||||||||||    ||||  |         |||||| G
  GUCUUAGGAGUG    GGUG  U         UUUUAU U
UU            UGUG    GU -UUUUUUUU      U
Stem-loop sequence UAGGAUUUUCAUUAUUACUGGUGUGUUAUUAGAGUAUGGUUUAUUUUUUUUUUUUUUGGUGGGUGUGUGAGGAUUCUGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014763760.1
ncRNA:21   UUGUCUUAGGAGUGUGUGGGU   1
  =|||*||||||||||||*|||
targets:306   GACAAAAUCCUCACACAACCA   326

2.5 PREDICTED: Glycine max porphobilinogen deaminase, chloroplastic-like (LOC100818391), transcript variant X1, mRNA porphobilinogen deaminase, chloroplastic-like(LOC100818391) coding protein psRNATarget
XM_014763761.1
ncRNA:21   UUGUCUUAGGAGUGUGUGGGU   1
  =|||*||||||||||||*|||
targets:312   GACAAAAUCCUCACACAACCA   332

2.5 PREDICTED: Glycine max porphobilinogen deaminase, chloroplastic-like (LOC100818391), transcript variant X2, mRNA porphobilinogen deaminase, chloroplastic-like(LOC100818391) coding protein psRNATarget
XM_014763762.1
ncRNA:21   UUGUCUUAGGAGUGUGUGGGU   1
  =|||*||||||||||||*|||
targets:343   GACAAAAUCCUCACACAACCA   363

2.5 PREDICTED: Glycine max porphobilinogen deaminase, chloroplastic-like (LOC100818391), transcript variant X3, mRNA porphobilinogen deaminase, chloroplastic-like(LOC100818391) coding protein psRNATarget
XM_014775781.1
ncRNA:21   UUGUCUUAGGAGUGUGUGGGU   1
  =|||*||||||||||||*|||
targets:360   GACAAAAUCCUCACACAACCA   380

2.5 PREDICTED: Glycine max porphobilinogen deaminase, chloroplastic-like (LOC100779132), transcript variant X1, mRNA porphobilinogen deaminase, chloroplastic-like(LOC100779132) coding protein psRNATarget
NM_001253959.2
ncRNA:21   UUGUCUUAGGAGUGUGUGGGU   1
  =|||*||||||||||||*|||
targets:374   GACAAAAUCCUCACACAACCA   394

2.5 Glycine max porphobilinogen deaminase, chloroplastic-like (LOC100779132), mRNA porphobilinogen deaminase, chloroplastic-like(LOC100779132) coding protein psRNATarget
BT096074.1
ncRNA:21   UUGUCUUAGGAGUGUGUGGGU   1
  =|||*||||||||||||*|||
targets:377   GACAAAAUCCUCACACAACCA   397

2.5 Soybean clone JCVI-FLGm-20G14 unknown mRNA NA coding protein psRNATarget
XM_003543807.3
ncRNA:21   UUGUCUUAGGAGUGUGUGGGU   1
  ||||**||||||||||||||*
targets:55   AACAACAUCCUCACACACCCC   75

3.0 PREDICTED: Glycine max NAC domain-containing protein 100-like (LOC100781383), mRNA NAC domain-containing protein 100-like(LOC100781383) coding protein psRNATarget